Variant report

Variant	rs9464435
Chromosome Location	chr6:57195934-57195935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:57182975..57187891-chr6:57191602..57197743,6	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs6919145	0.90[AFR][1000 genomes]
rs6923392	0.90[AFR][1000 genomes]
rs7738549	1.00[AMR][1000 genomes]
rs9475843	1.00[AMR][1000 genomes]
rs9475849	1.00[AMR][1000 genomes]
rs9475904	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv2758056	chr6:57184541-57562604	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	esv2759432	chr6:57184541-57562604	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1034139	chr6:57192993-57253423	ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1022055	chr6:57192993-57353692	Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:57183000-57199400	Weak transcription	HSMMtube	muscle
2	chr6:57183200-57199200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:57184200-57201200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:57184600-57196000	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr6:57184600-57196200	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:57184600-57199200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:57184800-57199600	Strong transcription	HSMM	muscle
8	chr6:57187400-57196600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr6:57190000-57199800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:57190000-57200000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:57191800-57199800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:57192000-57199600	ZNF genes & repeats	GM12878-XiMat	blood
13	chr6:57192000-57200000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:57192200-57199800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
15	chr6:57192200-57199800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
16	chr6:57192200-57199800	ZNF genes & repeats	Dnd41	blood
17	chr6:57192400-57197600	ZNF genes & repeats	NHDF-Ad	bronchial
18	chr6:57192400-57197600	Weak transcription	NHEK	skin
19	chr6:57192600-57199800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:57192600-57200000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:57193000-57199200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:57193000-57199400	Weak transcription	Placenta	Placenta
23	chr6:57193000-57201000	Weak transcription	Gastric	stomach
24	chr6:57193000-57203000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:57193200-57196000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:57193200-57196400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:57193400-57196200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:57193600-57196200	Weak transcription	Colonic Mucosa	Colon
29	chr6:57193600-57196200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
30	chr6:57193600-57198000	Weak transcription	NH-A	brain
31	chr6:57193600-57198000	Weak transcription	NHLF	lung
32	chr6:57193600-57199400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr6:57193600-57207400	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr6:57194000-57196800	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr6:57194200-57196000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:57194200-57196600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
37	chr6:57194200-57199800	ZNF genes & repeats	Primary T cells from cord blood	blood
38	chr6:57194400-57198600	Weak transcription	Fetal Kidney	kidney
39	chr6:57194600-57196800	Weak transcription	Primary B cells from cord blood	blood
40	chr6:57194600-57196800	Weak transcription	Liver	Liver
41	chr6:57194600-57197000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:57194600-57197200	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr6:57194600-57198800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr6:57194600-57199000	Weak transcription	Left Ventricle	heart
45	chr6:57194600-57199200	Weak transcription	Thymus	Thymus
46	chr6:57194600-57201200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr6:57194600-57202000	Weak transcription	Fetal Stomach	stomach
48	chr6:57194600-57214800	Weak transcription	Small Intestine	intestine
49	chr6:57194600-57215200	Weak transcription	Ovary	ovary
50	chr6:57194600-57226200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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