Variant report

Variant	rs6909556
Chromosome Location	chr6:143983097-143983098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs3902794	0.85[AFR][1000 genomes]
rs56088548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58309086	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6901574	0.93[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778644	0.85[AMR][1000 genomes]
rs73778646	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778656	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778657	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778659	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778660	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778662	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7750786	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7753075	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7755210	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1032369	chr6:143925374-144007513	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv604805	chr6:143930404-144005949	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143974600-143984400	Weak transcription	Fetal Intestine Large	intestine
2	chr6:143980800-143983200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:143980800-143994200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:143981800-143994200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:143982800-143983400	Enhancers	Fetal Muscle Leg	muscle
6	chr6:143982800-143983800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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