Variant report

Variant	rs73778660
Chromosome Location	chr6:144001812-144001813
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144000686..144002814-chr6:144004185..144006059,2	K562	blood:
2	chr6:143998230..143999766-chr6:144001245..144002787,2	K562	blood:
3	chr6:143998230..144000986-chr6:144001245..144005130,4	K562	blood:
4	chr6:143999802..144002439-chr6:144003209..144005357,2	MCF-7	breast:
5	chr6:143998977..144000615-chr6:144001616..144004213,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112419	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs56088548	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58309086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6901574	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6909556	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778644	0.85[AMR][1000 genomes]
rs73778646	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778651	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778653	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7750786	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7753075	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7755210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1032369	chr6:143925374-144007513	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv604805	chr6:143930404-144005949	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143998200-144002800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:143998600-144002000	Active TSS	H1 Cell Line	embryonic stem cell
3	chr6:143998600-144002000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:143998600-144002000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:143998600-144002000	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr6:143998600-144002000	Active TSS	Right Ventricle	heart
7	chr6:143998600-144002000	Active TSS	NHDF-Ad	bronchial
8	chr6:143998600-144002200	Active TSS	Stomach Smooth Muscle	stomach
9	chr6:143998600-144002400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:143998800-144002000	Active TSS	Placenta	Placenta
11	chr6:143998800-144002000	Active TSS	Ovary	ovary
12	chr6:143998800-144002200	Active TSS	Duodenum Smooth Muscle	Duodenum
13	chr6:143999600-144003000	Active TSS	Right Atrium	heart
14	chr6:143999800-144003400	Weak transcription	Gastric	stomach
15	chr6:144000000-144003400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:144000000-144005600	Weak transcription	Small Intestine	intestine
17	chr6:144000200-144002200	Flanking Active TSS	Adipose Nuclei	Adipose
18	chr6:144000400-144003400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:144000600-144002000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:144000600-144002000	Active TSS	Skeletal Muscle Male	skeletal muscle
21	chr6:144000600-144002800	Enhancers	Fetal Heart	heart
22	chr6:144000600-144003400	Weak transcription	Esophagus	oesophagus
23	chr6:144000600-144003400	Weak transcription	Fetal Intestine Large	intestine
24	chr6:144000600-144003400	Weak transcription	Fetal Intestine Small	intestine
25	chr6:144000600-144003400	Weak transcription	Lung	lung
26	chr6:144000600-144007800	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr6:144000600-144008800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:144000800-144003400	Weak transcription	Duodenum Mucosa	Duodenum
29	chr6:144000800-144008000	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr6:144001000-144002200	Flanking Active TSS	HUVEC	blood vessel
31	chr6:144001200-144002200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
32	chr6:144001200-144002400	Active TSS	Osteobl	bone
33	chr6:144001200-144002800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:144001200-144003200	Weak transcription	Primary hematopoietic stem cells	blood
35	chr6:144001200-144003200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:144001400-144002000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr6:144001400-144002000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
38	chr6:144001400-144002000	Active TSS	Left Ventricle	heart
39	chr6:144001400-144002200	Active TSS	NHLF	lung
40	chr6:144001400-144002600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:144001400-144003400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:144001400-144004000	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr6:144001600-144002000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:144001600-144002000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:144001600-144002200	Weak transcription	NHEK	skin
46	chr6:144001600-144002400	Enhancers	Fetal Lung	lung
47	chr6:144001600-144002800	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr6:144001600-144003200	Weak transcription	Fetal Muscle Trunk	muscle
49	chr6:144001600-144003200	Enhancers	HepG2	liver
50	chr6:144001600-144003400	Weak transcription	Fetal Stomach	stomach

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