Variant report

Variant	rs7753075
Chromosome Location	chr6:144012007-144012008
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143996710..144001910-chr6:144005817..144014875,10	MCF-7	breast:
2	chr6:144011351..144015622-chr6:144016784..144019989,3	K562	blood:
3	chr6:144011387..144013559-chr6:144018568..144021455,2	MCF-7	breast:
4	chr6:143997575..144000803-chr6:144010017..144014247,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112419	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs56088548	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58189054	1.00[ASN][1000 genomes]
rs58309086	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6901574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6909556	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778644	0.85[AMR][1000 genomes]
rs73778646	1.00[AMR][1000 genomes]
rs73778651	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778653	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778656	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778657	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778658	1.00[ASN][1000 genomes]
rs73778659	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778660	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778662	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7750786	1.00[AMR][1000 genomes]
rs7755210	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496745	0.94[ASN][1000 genomes]
rs9496746	0.94[ASN][1000 genomes]
rs9496749	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv886737	chr6:144010570-144033992	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144001800-144012200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr6:144002000-144013000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:144003600-144015000	Weak transcription	Esophagus	oesophagus
4	chr6:144003600-144015000	Weak transcription	Gastric	stomach
5	chr6:144004400-144013000	Weak transcription	Fetal Kidney	kidney
6	chr6:144005000-144020400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:144005600-144016000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:144005800-144015200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:144006000-144013200	Weak transcription	Small Intestine	intestine
10	chr6:144006000-144017800	Weak transcription	Fetal Heart	heart
11	chr6:144007800-144013200	Enhancers	HepG2	liver
12	chr6:144007800-144013600	Enhancers	H1 Cell Line	embryonic stem cell
13	chr6:144008000-144014000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr6:144008400-144012800	Weak transcription	Fetal Intestine Large	intestine
15	chr6:144008600-144015000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:144008800-144015000	Weak transcription	NHEK	skin
17	chr6:144009000-144013400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr6:144009000-144015200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:144009200-144015000	Weak transcription	HMEC	breast
20	chr6:144009200-144016200	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr6:144009400-144012800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:144009400-144015600	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr6:144009400-144016600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:144009600-144013000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr6:144009600-144015000	Weak transcription	Colon Smooth Muscle	Colon
26	chr6:144010000-144014000	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr6:144010200-144012800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:144010200-144012800	Weak transcription	Right Atrium	heart
29	chr6:144010200-144013600	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr6:144010200-144015200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:144010200-144019600	Weak transcription	Spleen	Spleen
32	chr6:144010400-144012200	Weak transcription	NHLF	lung
33	chr6:144010400-144012600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr6:144010400-144012600	Weak transcription	Duodenum Mucosa	Duodenum
35	chr6:144010400-144012600	Weak transcription	NHDF-Ad	bronchial
36	chr6:144010400-144013000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr6:144010400-144013000	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr6:144010400-144013200	Weak transcription	Fetal Intestine Small	intestine
39	chr6:144010400-144015000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr6:144010400-144017800	Weak transcription	Ovary	ovary
41	chr6:144010400-144020000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr6:144010600-144013200	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr6:144010600-144013400	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr6:144010800-144013600	Enhancers	Muscle Satellite Cultured Cells	--
45	chr6:144011000-144012200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr6:144011000-144013200	Enhancers	Osteobl	bone
47	chr6:144011200-144012400	Enhancers	Adipose Nuclei	Adipose
48	chr6:144011200-144013400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr6:144011200-144013400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr6:144011200-144014400	Enhancers	Fetal Lung	lung

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