Variant report

Variant	rs73778662
Chromosome Location	chr6:144008058-144008059
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143996710..144001910-chr6:144005817..144014875,10	MCF-7	breast:
2	chr6:143998001..144000467-chr6:144005512..144008352,2	MCF-7	breast:
3	chr6:144004544..144009046-chr6:144017005..144020189,4	K562	blood:
4	chr6:143999648..144001739-chr6:144006166..144008073,2	K562	blood:

Variant related genes	Relation type
ENSG00000112419	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs56088548	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58309086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6901574	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6909556	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778644	0.85[AMR][1000 genomes]
rs73778646	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778651	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778653	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7750786	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7753075	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7755210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144000600-144008800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:144001800-144012200	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr6:144002000-144008400	Weak transcription	Placenta	Placenta
4	chr6:144002000-144013000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:144002800-144011200	Weak transcription	Hela-S3	cervix
6	chr6:144003600-144009800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:144003600-144015000	Weak transcription	Esophagus	oesophagus
8	chr6:144003600-144015000	Weak transcription	Gastric	stomach
9	chr6:144003800-144008800	Weak transcription	Fetal Stomach	stomach
10	chr6:144004400-144010000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr6:144004400-144013000	Weak transcription	Fetal Kidney	kidney
12	chr6:144005000-144009000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:144005000-144020400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr6:144005600-144016000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:144005800-144009000	Weak transcription	Fetal Muscle Leg	muscle
16	chr6:144005800-144015200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr6:144006000-144008600	Weak transcription	Fetal Lung	lung
18	chr6:144006000-144009000	Weak transcription	Right Ventricle	heart
19	chr6:144006000-144009800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr6:144006000-144011000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:144006000-144013200	Weak transcription	Small Intestine	intestine
22	chr6:144006000-144017800	Weak transcription	Fetal Heart	heart
23	chr6:144007600-144008400	Enhancers	Ovary	ovary
24	chr6:144007800-144008200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:144007800-144008200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:144007800-144008200	Enhancers	Lung	lung
27	chr6:144007800-144008200	Enhancers	Rectal Mucosa Donor 29	rectum
28	chr6:144007800-144008400	Enhancers	H9 Cell Line	embryonic stem cell
29	chr6:144007800-144008400	Enhancers	Fetal Intestine Large	intestine
30	chr6:144007800-144008600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:144007800-144008600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:144007800-144008600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:144007800-144008600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:144007800-144008600	Enhancers	NHLF	lung
35	chr6:144007800-144008800	Enhancers	NHEK	skin
36	chr6:144007800-144009000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:144007800-144009000	Enhancers	HSMM	muscle
38	chr6:144007800-144009200	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr6:144007800-144009200	Enhancers	HMEC	breast
40	chr6:144007800-144009200	Enhancers	NH-A	brain
41	chr6:144007800-144009400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:144007800-144009400	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr6:144007800-144009400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr6:144007800-144009600	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr6:144007800-144009600	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr6:144007800-144011800	Enhancers	Left Ventricle	heart
47	chr6:144007800-144013200	Enhancers	HepG2	liver
48	chr6:144007800-144013600	Enhancers	H1 Cell Line	embryonic stem cell
49	chr6:144008000-144008200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr6:144008000-144008200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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