Variant report

Variant	rs6916467
Chromosome Location	chr6:4896248-4896249
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:4895552..4898215-chr6:4935545..4937308,2	K562	blood:
2	chr6:4894595..4897390-chr6:4897999..4900907,2	MCF-7	breast:
3	chr6:4865807..4867722-chr6:4893778..4896538,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10080391	0.81[ASN][1000 genomes]
rs11967994	0.91[CHB][hapmap]
rs11968021	0.91[CHB][hapmap]
rs1265332	0.82[CHB][hapmap]
rs1265333	0.82[CHB][hapmap]
rs1265335	0.91[CHB][hapmap]
rs13199417	1.00[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs13212871	1.00[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs1557032	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17138856	0.82[CHB][hapmap]
rs17138859	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17138931	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17138959	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17138966	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs184588	0.91[CHB][hapmap]
rs2235429	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2326553	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs233476	0.91[CHB][hapmap]
rs28580117	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3748078	0.82[CHB][hapmap]
rs4376391	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56278978	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58368827	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60609172	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60949901	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61278797	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6916304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919412	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73348319	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73348345	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73348361	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73362530	1.00[EUR][1000 genomes]
rs73362564	1.00[EUR][1000 genomes]
rs73364523	1.00[EUR][1000 genomes]
rs73364567	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73364571	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7743735	1.00[EUR][1000 genomes]
rs7768749	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs811251	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs947151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9502239	1.00[EUR][1000 genomes]
rs9502244	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9502247	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9502248	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9502249	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9502250	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs9502251	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9504254	0.82[CHB][hapmap]
rs9504262	1.00[EUR][1000 genomes]
rs9504269	1.00[EUR][1000 genomes]
rs9504270	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9504271	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9504275	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9504276	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9504281	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9504284	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9504286	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv2422499	chr6:4745428-5073222	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv830577	chr6:4834567-5050544	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv3372254	chr6:4894378-4896926	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3352747	chr6:4894628-4896776	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3355663	chr6:4895153-4896251	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4872200-4898800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:4878200-4905200	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:4879600-4906200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:4880400-4907800	Weak transcription	Small Intestine	intestine
5	chr6:4880600-4898600	Weak transcription	HSMM	muscle
6	chr6:4882800-4909000	Weak transcription	Brain Anterior Caudate	brain
7	chr6:4884000-4898400	Weak transcription	Psoas Muscle	Psoas
8	chr6:4884800-4903800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:4885000-4908200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:4887200-4901400	Weak transcription	HSMMtube	muscle
11	chr6:4888000-4906400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr6:4889200-4906400	Weak transcription	NHLF	lung
13	chr6:4889400-4898400	Weak transcription	Fetal Lung	lung
14	chr6:4889600-4898400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr6:4890200-4898800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr6:4890200-4901800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr6:4890400-4897800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr6:4890600-4913800	Weak transcription	Hela-S3	cervix
19	chr6:4890800-4900600	Weak transcription	NH-A	brain
20	chr6:4891200-4899000	Weak transcription	Brain Germinal Matrix	brain
21	chr6:4891200-4905600	Weak transcription	Fetal Kidney	kidney
22	chr6:4891200-4907400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr6:4891400-4899200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr6:4891400-4900400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:4891400-4906400	Weak transcription	Fetal Heart	heart
26	chr6:4891600-4899000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr6:4891600-4899000	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr6:4891800-4898000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:4892000-4896800	Strong transcription	NHEK	skin
30	chr6:4892000-4897000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr6:4892000-4897200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:4892000-4897200	Strong transcription	Fetal Stomach	stomach
33	chr6:4892000-4897600	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr6:4892000-4897800	Strong transcription	Duodenum Mucosa	Duodenum
35	chr6:4892000-4898000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr6:4892000-4898400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr6:4892000-4898600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr6:4892000-4898600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr6:4892000-4898600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:4892000-4898600	Strong transcription	Fetal Intestine Small	intestine
41	chr6:4892000-4898800	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr6:4892000-4898800	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr6:4892000-4899000	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr6:4892200-4898800	Strong transcription	Primary B cells from peripheral blood	blood
45	chr6:4892800-4897200	Weak transcription	Fetal Brain Female	brain
46	chr6:4892800-4906400	Weak transcription	HUVEC	blood vessel
47	chr6:4892800-4906600	Weak transcription	Osteobl	bone
48	chr6:4893000-4899400	Weak transcription	Brain Substantia Nigra	brain
49	chr6:4893200-4898400	Weak transcription	HMEC	breast
50	chr6:4893200-4912600	Weak transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links