Variant report

Variant	rs9504269
Chromosome Location	chr6:4845050-4845051
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1557032	1.00[EUR][1000 genomes]
rs17138859	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17138931	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17138959	0.87[EUR][1000 genomes]
rs17138966	0.87[EUR][1000 genomes]
rs2235429	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4376391	1.00[EUR][1000 genomes]
rs56278978	1.00[EUR][1000 genomes]
rs58368827	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60609172	1.00[EUR][1000 genomes]
rs60949901	1.00[EUR][1000 genomes]
rs61278797	1.00[EUR][1000 genomes]
rs6916304	1.00[EUR][1000 genomes]
rs6916467	1.00[EUR][1000 genomes]
rs6919412	1.00[EUR][1000 genomes]
rs73348319	1.00[EUR][1000 genomes]
rs73348345	1.00[EUR][1000 genomes]
rs73348361	1.00[EUR][1000 genomes]
rs73362530	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73362564	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73364523	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73364567	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73364571	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7743735	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768749	1.00[EUR][1000 genomes]
rs811251	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs947151	1.00[EUR][1000 genomes]
rs9502239	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9502244	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9502247	1.00[EUR][1000 genomes]
rs9502248	1.00[EUR][1000 genomes]
rs9502249	1.00[EUR][1000 genomes]
rs9502251	0.87[EUR][1000 genomes]
rs9504262	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9504270	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9504271	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9504275	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9504276	1.00[EUR][1000 genomes]
rs9504281	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9504284	1.00[EUR][1000 genomes]
rs9504286	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2422499	chr6:4745428-5073222	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1015888	chr6:4787784-4883663	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv966675	chr6:4819733-4855009	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv830577	chr6:4834567-5050544	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4821200-4853600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:4830000-4848800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:4836800-4848600	Weak transcription	Right Ventricle	heart
4	chr6:4837400-4848400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:4840200-4847200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:4843600-4846400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:4843800-4845400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:4844400-4846600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:4844600-4846600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr6:4844600-4847200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr6:4844600-4847200	Weak transcription	Lung	lung
12	chr6:4844600-4847200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:4844600-4859600	Weak transcription	Spleen	Spleen
14	chr6:4844800-4846000	Weak transcription	Psoas Muscle	Psoas
15	chr6:4844800-4846600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:4844800-4846800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr6:4844800-4847200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:4844800-4847200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr6:4844800-4853200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:4844800-4854000	Weak transcription	NHEK	skin
21	chr6:4844800-4856600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr6:4844800-4863000	Weak transcription	Primary B cells from peripheral blood	blood
23	chr6:4845000-4847000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:4845000-4848800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:4845000-4849400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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