Variant report

Variant	rs9504262
Chromosome Location	chr6:4828584-4828585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:4754621..4757244-chr6:4826945..4828835,2	K562	blood:
2	chr6:4823551..4825869-chr6:4828345..4830418,3	MCF-7	breast:
3	chr6:4818944..4820656-chr6:4826722..4829112,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1557032	1.00[EUR][1000 genomes]
rs17138859	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17138931	1.00[EUR][1000 genomes]
rs17138959	0.87[EUR][1000 genomes]
rs17138966	0.87[EUR][1000 genomes]
rs2235429	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4376391	1.00[EUR][1000 genomes]
rs56278978	1.00[EUR][1000 genomes]
rs58368827	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60609172	1.00[EUR][1000 genomes]
rs60949901	1.00[EUR][1000 genomes]
rs61278797	1.00[EUR][1000 genomes]
rs6916304	1.00[EUR][1000 genomes]
rs6916467	1.00[EUR][1000 genomes]
rs6919412	1.00[EUR][1000 genomes]
rs73348319	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73348345	1.00[EUR][1000 genomes]
rs73348361	1.00[EUR][1000 genomes]
rs73362530	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73362564	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73364523	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73364567	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73364571	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7743735	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7768749	1.00[EUR][1000 genomes]
rs811251	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs947151	1.00[EUR][1000 genomes]
rs9502239	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9502244	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9502247	1.00[EUR][1000 genomes]
rs9502248	1.00[EUR][1000 genomes]
rs9502249	1.00[EUR][1000 genomes]
rs9502251	0.87[EUR][1000 genomes]
rs9504267	0.88[ASN][1000 genomes]
rs9504269	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9504270	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9504271	1.00[EUR][1000 genomes]
rs9504275	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9504276	1.00[EUR][1000 genomes]
rs9504281	1.00[EUR][1000 genomes]
rs9504284	1.00[EUR][1000 genomes]
rs9504286	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2422499	chr6:4745428-5073222	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1015888	chr6:4787784-4883663	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv966675	chr6:4819733-4855009	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4806800-4829400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:4812400-4829600	Weak transcription	Left Ventricle	heart
3	chr6:4812800-4828800	Weak transcription	Hela-S3	cervix
4	chr6:4814200-4829600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:4815200-4829600	Weak transcription	Lung	lung
6	chr6:4820400-4844200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:4821200-4853600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:4828000-4829800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
9	chr6:4828200-4830800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:4828400-4829400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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