Variant report

Variant	rs73362564
Chromosome Location	chr6:4806389-4806390
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:4804953..4807169-chr6:4808675..4810449,2	MCF-7	breast:
2	chr6:4804988..4807202-chr6:4935507..4937901,2	MCF-7	breast:
3	chr6:4800052..4801970-chr6:4804780..4807204,2	K562	blood:
4	chr6:4776564..4779894-chr6:4804757..4807195,3	MCF-7	breast:
5	chr6:4804785..4806447-chr6:4808370..4810719,2	K562	blood:

Variant related genes	Relation type
ENSG00000153046	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1557032	1.00[EUR][1000 genomes]
rs17138859	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17138931	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17138959	0.87[EUR][1000 genomes]
rs17138966	0.87[EUR][1000 genomes]
rs2235429	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4376391	1.00[EUR][1000 genomes]
rs56278978	1.00[EUR][1000 genomes]
rs58368827	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60609172	1.00[EUR][1000 genomes]
rs60949901	1.00[EUR][1000 genomes]
rs61278797	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6916304	1.00[EUR][1000 genomes]
rs6916467	1.00[EUR][1000 genomes]
rs6919412	1.00[EUR][1000 genomes]
rs73348319	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73348345	1.00[EUR][1000 genomes]
rs73348361	1.00[EUR][1000 genomes]
rs73362530	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73364523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73364567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73364571	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7743735	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7768749	1.00[EUR][1000 genomes]
rs811251	1.00[EUR][1000 genomes]
rs947151	1.00[EUR][1000 genomes]
rs9502239	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9502244	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9502247	1.00[EUR][1000 genomes]
rs9502248	1.00[EUR][1000 genomes]
rs9502249	1.00[EUR][1000 genomes]
rs9502251	0.87[EUR][1000 genomes]
rs9504262	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9504267	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9504269	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9504270	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9504271	1.00[EUR][1000 genomes]
rs9504275	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9504276	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9504281	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9504284	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9504286	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2422499	chr6:4745428-5073222	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1015888	chr6:4787784-4883663	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4787400-4808800	Weak transcription	Aorta	Aorta
2	chr6:4794800-4818800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:4795200-4806600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:4800000-4810400	Weak transcription	Fetal Intestine Small	intestine
5	chr6:4801800-4811600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:4802200-4811200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:4802400-4807000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr6:4802400-4807400	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr6:4802400-4810400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:4802400-4812000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr6:4802400-4818800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:4803200-4806600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:4803400-4806400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr6:4803400-4806800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr6:4803400-4807600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:4803400-4814600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr6:4803600-4806400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:4803600-4806400	Enhancers	A549	lung
19	chr6:4803600-4808400	Weak transcription	Primary T cells from cord blood	blood
20	chr6:4803600-4810800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:4803800-4806600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr6:4803800-4807000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr6:4803800-4810400	Weak transcription	Small Intestine	intestine
24	chr6:4804000-4807000	Weak transcription	Colon Smooth Muscle	Colon
25	chr6:4804000-4807200	Weak transcription	Fetal Thymus	thymus
26	chr6:4804000-4809200	Weak transcription	Fetal Stomach	stomach
27	chr6:4804400-4807400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr6:4804600-4806800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr6:4804600-4807200	Weak transcription	K562	blood
30	chr6:4804600-4807400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:4804600-4807400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr6:4804600-4810200	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr6:4804600-4810800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr6:4804600-4812000	Weak transcription	Pancreas	Pancrea
35	chr6:4804600-4812200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr6:4804600-4812200	Weak transcription	HSMMtube	muscle
37	chr6:4804800-4806600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr6:4805000-4807000	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr6:4805000-4809200	Weak transcription	Primary B cells from cord blood	blood
40	chr6:4805000-4810200	Weak transcription	Osteobl	bone
41	chr6:4805200-4806600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr6:4805200-4810200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:4805400-4806800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr6:4805600-4806400	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr6:4805600-4806400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr6:4805600-4806800	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr6:4805600-4807000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr6:4805600-4807400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
49	chr6:4805600-4807400	Enhancers	Lung	lung
50	chr6:4805600-4807400	Enhancers	Psoas Muscle	Psoas

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