Variant report

Variant	rs6916808
Chromosome Location	chr6:149152025-149152026
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149151917..149153871-chr6:149267046..149269018,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11155597	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11155599	0.95[ASN][1000 genomes]
rs12525295	0.95[ASN][1000 genomes]
rs12526482	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529264	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4598105	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4895771	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4897053	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4897056	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4897059	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs753423	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9403986	0.83[AMR][1000 genomes]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149141600-149157800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr6:149147000-149152200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:149147200-149152200	Weak transcription	Osteobl	bone
4	chr6:149147200-149156600	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:149150000-149153000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:149150000-149153200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:149150000-149153200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:149150200-149152200	Enhancers	HMEC	breast
9	chr6:149150200-149153000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:149150400-149152400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:149150400-149152600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr6:149150400-149152600	Weak transcription	Fetal Brain Male	brain
13	chr6:149150400-149152800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:149150400-149152800	Enhancers	NHDF-Ad	bronchial
15	chr6:149150400-149153000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:149150400-149153200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:149150600-149159200	Weak transcription	Lung	lung
18	chr6:149150800-149152200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:149150800-149154400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:149150800-149159200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr6:149150800-149176000	Weak transcription	Aorta	Aorta
22	chr6:149151000-149152400	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr6:149151200-149153000	Enhancers	Fetal Thymus	thymus
24	chr6:149151200-149153200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:149151200-149153200	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr6:149151400-149152200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr6:149151400-149152200	Flanking Active TSS	Dnd41	blood
28	chr6:149151400-149157000	Weak transcription	NHLF	lung
29	chr6:149151400-149157800	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr6:149151400-149158400	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr6:149151400-149159400	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr6:149151600-149152200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
33	chr6:149151600-149152200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr6:149151600-149152400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
35	chr6:149151600-149153000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
36	chr6:149151600-149157200	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr6:149151800-149152400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr6:149151800-149152400	Flanking Active TSS	Primary B cells from peripheral blood	blood
39	chr6:149151800-149152400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
40	chr6:149151800-149152400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
41	chr6:149151800-149152400	Active TSS	Thymus	Thymus
42	chr6:149151800-149152600	Active TSS	Primary T cells fromperipheralblood	blood
43	chr6:149151800-149152600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr6:149151800-149152600	Enhancers	GM12878-XiMat	blood
45	chr6:149151800-149157600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr6:149152000-149152200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
47	chr6:149152000-149152400	Active TSS	Primary T cells from cord blood	blood
48	chr6:149152000-149152400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
49	chr6:149152000-149152600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
50	chr6:149152000-149153000	Enhancers	Primary T helper naive cells from peripheral blood	blood

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