Variant report

Variant	rs12529264
Chromosome Location	chr6:149163503-149163504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11155597	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11155599	0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12525295	0.95[ASN][1000 genomes]
rs12526482	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4598105	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4895771	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4897053	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4897056	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4897059	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6916808	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs753423	0.93[ASW][hapmap];0.87[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7751854	1.00[JPT][hapmap]
rs9390613	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs9403986	0.83[GIH][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12529264	C6orf97	cis	parietal	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149150800-149176000	Weak transcription	Aorta	Aorta
2	chr6:149153400-149168000	Weak transcription	Right Atrium	heart
3	chr6:149159400-149170000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:149159600-149168000	Weak transcription	Pancreas	Pancrea
5	chr6:149159600-149168400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:149160000-149178600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:149161800-149171600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:149162000-149163600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr6:149162000-149168200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:149162000-149169800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr6:149162000-149171400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:149162000-149171600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:149162200-149163600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:149162200-149166400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:149162200-149168000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:149162200-149168400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:149162200-149170000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr6:149162200-149170000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:149162200-149171400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr6:149162200-149174800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:149162200-149174800	Weak transcription	HMEC	breast
22	chr6:149162400-149163600	Weak transcription	NHDF-Ad	bronchial
23	chr6:149162800-149164800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:149163000-149163800	Enhancers	Lung	lung

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