Variant report

Variant	rs9390613
Chromosome Location	chr6:149125116-149125117
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149120557..149122117-chr6:149122614..149125263,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11155597	0.81[AMR][1000 genomes]
rs12529264	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs1842772	0.83[JPT][hapmap]
rs2128333	0.83[JPT][hapmap]
rs2242298	0.83[JPT][hapmap]
rs2242299	0.81[CHB][hapmap]
rs4895772	0.84[EUR][1000 genomes]
rs4897053	0.83[AMR][1000 genomes]
rs4897058	0.91[ASN][1000 genomes]
rs4897059	0.84[TSI][hapmap]
rs753423	0.83[GIH][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap]
rs9377167	0.90[CHB][hapmap]
rs9390615	0.81[CHB][hapmap]
rs9403986	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403987	0.82[JPT][hapmap]
rs9403991	0.81[CHB][hapmap]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149115800-149144800	Weak transcription	Primary B cells from cord blood	blood
2	chr6:149116200-149133600	Weak transcription	Fetal Stomach	stomach
3	chr6:149120600-149125400	Weak transcription	Pancreas	Pancrea
4	chr6:149121600-149128600	Weak transcription	Stomach Mucosa	stomach
5	chr6:149121800-149130000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:149122000-149126400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:149122000-149126600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:149122000-149126800	Weak transcription	NHEK	skin
9	chr6:149122200-149131200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:149122400-149125400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:149122400-149126400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:149122600-149125400	Weak transcription	Osteobl	bone
13	chr6:149123400-149129000	Weak transcription	Primary B cells from peripheral blood	blood
14	chr6:149123400-149129200	Weak transcription	Spleen	Spleen
15	chr6:149123800-149125200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr6:149124000-149125200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr6:149124200-149127400	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr6:149124800-149125200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:149124800-149125400	Weak transcription	Fetal Lung	lung
20	chr6:149124800-149125600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:149124800-149125600	Enhancers	Esophagus	oesophagus
22	chr6:149124800-149125800	Enhancers	H9 Cell Line	embryonic stem cell
23	chr6:149124800-149125800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:149124800-149125800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:149124800-149125800	Enhancers	Ovary	ovary
26	chr6:149124800-149127400	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr6:149124800-149127400	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr6:149124800-149127400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:149124800-149128200	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr6:149125000-149125200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:149125000-149125400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr6:149125000-149125400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:149125000-149125600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
34	chr6:149125000-149125600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr6:149125000-149125600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:149125000-149125600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr6:149125000-149125600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:149125000-149125800	Enhancers	H1 Cell Line	embryonic stem cell
39	chr6:149125000-149125800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr6:149125000-149126400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:149125000-149127400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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