Variant report

Variant	rs9403987
Chromosome Location	chr6:149140643-149140644
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149139602..149142169-chr6:149143685..149146727,3	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12195548	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13211473	0.89[CEU][hapmap]
rs1842771	1.00[CEU][hapmap];0.87[JPT][hapmap];0.92[EUR][1000 genomes]
rs1842772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2128333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2242298	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9373575	1.00[CEU][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9390613	0.82[JPT][hapmap]
rs9399665	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9403986	0.82[JPT][hapmap]
rs9403988	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9403990	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs9403992	0.91[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149115800-149144800	Weak transcription	Primary B cells from cord blood	blood
2	chr6:149135600-149147800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:149137000-149141200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:149137000-149141200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:149137000-149141400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr6:149137200-149141200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:149137600-149141400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr6:149139400-149141400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:149139400-149143600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:149139400-149144200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:149139600-149144400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr6:149139600-149150400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:149139800-149140800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr6:149139800-149141200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
15	chr6:149139800-149141200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:149140000-149140800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:149140000-149141000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:149140000-149141000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:149140000-149141000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr6:149140200-149140800	Enhancers	Osteobl	bone
21	chr6:149140200-149141000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
22	chr6:149140200-149141000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:149140200-149141600	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr6:149140400-149141000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr6:149140400-149141200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr6:149140400-149141200	Enhancers	Hela-S3	cervix
27	chr6:149140400-149141600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:149140600-149141200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
29	chr6:149140600-149141200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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