Variant report

Variant	rs2242298
Chromosome Location	chr6:149173093-149173094
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11155603	0.82[AMR][1000 genomes]
rs12195548	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13211473	0.85[CEU][hapmap]
rs1842771	0.96[CEU][hapmap];0.87[JPT][hapmap];0.83[EUR][1000 genomes]
rs1842772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2128333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9373575	1.00[CEU][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs9377166	0.88[AMR][1000 genomes]
rs9390613	0.83[JPT][hapmap]
rs9399665	0.90[EUR][1000 genomes]
rs9403986	0.83[JPT][hapmap]
rs9403987	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9403988	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs9403990	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9403992	0.99[ASN][1000 genomes]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149150800-149176000	Weak transcription	Aorta	Aorta
2	chr6:149160000-149178600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:149162200-149174800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:149162200-149174800	Weak transcription	HMEC	breast
5	chr6:149168600-149177600	Weak transcription	Spleen	Spleen
6	chr6:149168600-149178400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr6:149168800-149178800	Weak transcription	Placenta	Placenta
8	chr6:149169200-149178400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:149170200-149175000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:149170400-149173400	Weak transcription	Lung	lung
11	chr6:149170400-149174800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:149170400-149175000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:149170400-149178800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:149171000-149174000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:149171400-149173200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr6:149171400-149173200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:149171400-149173400	Enhancers	H1 Cell Line	embryonic stem cell
18	chr6:149171400-149174600	Enhancers	Pancreas	Pancrea
19	chr6:149171600-149173200	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr6:149171600-149173400	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr6:149171600-149173600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:149171800-149173400	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr6:149171800-149173800	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr6:149172000-149173400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:149172000-149173400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:149172000-149173600	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr6:149172200-149173200	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr6:149172200-149173400	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr6:149172200-149185600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr6:149172400-149175200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr6:149172400-149175200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr6:149172600-149173200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:149172600-149173600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:149172600-149173600	Enhancers	Fetal Lung	lung
35	chr6:149172600-149173600	Enhancers	Fetal Stomach	stomach
36	chr6:149172600-149173800	Enhancers	Fetal Heart	heart
37	chr6:149172600-149174000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:149172600-149174000	Enhancers	Primary B cells from peripheral blood	blood
39	chr6:149172600-149174400	Enhancers	Fetal Brain Male	brain
40	chr6:149172800-149174000	Enhancers	Fetal Muscle Leg	muscle
41	chr6:149172800-149175200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr6:149172800-149175200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr6:149173000-149173200	Enhancers	Esophagus	oesophagus
44	chr6:149173000-149173200	Enhancers	Fetal Thymus	thymus
45	chr6:149173000-149173800	Enhancers	Stomach Mucosa	stomach
46	chr6:149173000-149174000	Enhancers	Fetal Brain Female	brain
47	chr6:149173000-149174000	Enhancers	Fetal Muscle Trunk	muscle
48	chr6:149173000-149174000	Enhancers	Ovary	ovary

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