Variant report

Variant	rs2128333
Chromosome Location	chr6:149161504-149161505
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11155603	0.83[AMR][1000 genomes]
rs12195548	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13211473	0.88[CEU][hapmap]
rs1842771	1.00[CEU][hapmap];0.87[JPT][hapmap];0.86[EUR][1000 genomes]
rs1842772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2242298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9373575	1.00[CEU][hapmap];0.90[GIH][hapmap];0.82[JPT][hapmap];0.94[TSI][hapmap];0.94[EUR][1000 genomes]
rs9377166	0.96[MEX][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes]
rs9390613	0.83[JPT][hapmap]
rs9399665	0.95[EUR][1000 genomes]
rs9403986	0.83[JPT][hapmap]
rs9403987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9403988	1.00[CEU][hapmap];0.90[GIH][hapmap];0.97[TSI][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9403990	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9403992	0.94[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149150800-149176000	Weak transcription	Aorta	Aorta
2	chr6:149153400-149168000	Weak transcription	Right Atrium	heart
3	chr6:149157600-149162000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:149158000-149162800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:149158400-149161800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:149158400-149162200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:149159400-149161600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:149159400-149162200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:149159400-149170000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:149159600-149162000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr6:149159600-149163000	Weak transcription	Lung	lung
12	chr6:149159600-149168000	Weak transcription	Pancreas	Pancrea
13	chr6:149159600-149168400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:149160000-149178600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr6:149160400-149162000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr6:149160600-149161800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:149160600-149162200	Enhancers	HMEC	breast
18	chr6:149160800-149161800	Enhancers	H9 Cell Line	embryonic stem cell
19	chr6:149160800-149161800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:149160800-149161800	Weak transcription	Colon Smooth Muscle	Colon
21	chr6:149160800-149162000	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr6:149160800-149162200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:149160800-149162200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:149161200-149161600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr6:149161200-149161800	Flanking Active TSS	NHEK	skin
26	chr6:149161200-149162000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:149161200-149162000	Enhancers	NH-A	brain
28	chr6:149161200-149162200	Enhancers	H1 Cell Line	embryonic stem cell
29	chr6:149161200-149162200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:149161200-149162200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr6:149161400-149161600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr6:149161400-149162200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:149161400-149162200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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