Variant report

Variant	rs9403990
Chromosome Location	chr6:149168205-149168206
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149153509..149156149-chr6:149168064..149169893,2	MCF-7	breast:
2	chr6:149166723..149169340-chr6:149169720..149171670,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11155603	0.82[AMR][1000 genomes]
rs12195548	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13211473	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs1842771	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1842772	1.00[CEU][hapmap];0.92[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2128333	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2242298	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9373575	1.00[CEU][hapmap];0.87[GIH][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes]
rs9377166	1.00[MEX][hapmap];0.87[TSI][hapmap];0.88[AMR][1000 genomes]
rs9399665	0.90[EUR][1000 genomes]
rs9403987	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs9403988	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9403989	1.00[JPT][hapmap];0.80[ASN][1000 genomes]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149150800-149176000	Weak transcription	Aorta	Aorta
2	chr6:149159400-149170000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:149159600-149168400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:149160000-149178600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:149161800-149171600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:149162000-149169800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:149162000-149171400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:149162000-149171600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:149162200-149168400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:149162200-149170000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr6:149162200-149170000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:149162200-149171400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:149162200-149174800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:149162200-149174800	Weak transcription	HMEC	breast
15	chr6:149166400-149173000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr6:149166800-149168400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:149167800-149168400	Enhancers	H9 Cell Line	embryonic stem cell
18	chr6:149167800-149169400	Enhancers	Primary B cells from peripheral blood	blood
19	chr6:149168000-149168400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:149168000-149168600	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr6:149168000-149168600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr6:149168000-149168600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:149168000-149168600	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr6:149168000-149168600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:149168000-149168600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr6:149168000-149168600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr6:149168000-149168600	Enhancers	Left Ventricle	heart
28	chr6:149168000-149168600	Enhancers	Lung	lung
29	chr6:149168000-149168600	Enhancers	Ovary	ovary
30	chr6:149168000-149168600	Enhancers	Psoas Muscle	Psoas
31	chr6:149168000-149168600	Enhancers	Right Atrium	heart
32	chr6:149168000-149168600	Enhancers	Stomach Smooth Muscle	stomach
33	chr6:149168000-149168600	Enhancers	Spleen	Spleen
34	chr6:149168000-149168800	Enhancers	Adipose Nuclei	Adipose
35	chr6:149168000-149168800	Enhancers	Pancreas	Pancrea
36	chr6:149168000-149169200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:149168000-149169400	Enhancers	Colon Smooth Muscle	Colon
38	chr6:149168000-149169400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr6:149168000-149169600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:149168000-149170600	Enhancers	Fetal Heart	heart
41	chr6:149168200-149168600	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr6:149168200-149168600	Enhancers	NHDF-Ad	bronchial
43	chr6:149168200-149168800	Enhancers	Right Ventricle	heart
44	chr6:149168200-149169200	Enhancers	Brain Anterior Caudate	brain
45	chr6:149168200-149169400	Enhancers	Brain Substantia Nigra	brain
46	chr6:149168200-149170000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr6:149168200-149170000	Weak transcription	Esophagus	oesophagus
48	chr6:149168200-149172000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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