Variant report

Variant	rs1842772
Chromosome Location	chr6:149152671-149152672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149151917..149153871-chr6:149267046..149269018,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12195548	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13211473	0.88[CEU][hapmap]
rs1842771	1.00[CEU][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes]
rs2128333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2242298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9373575	1.00[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.94[TSI][hapmap];0.93[EUR][1000 genomes]
rs9377166	0.96[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes]
rs9390613	0.83[JPT][hapmap]
rs9399665	0.94[EUR][1000 genomes]
rs9403986	0.83[JPT][hapmap]
rs9403987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9403988	1.00[CEU][hapmap];0.95[GIH][hapmap];0.97[TSI][hapmap];0.94[EUR][1000 genomes]
rs9403990	1.00[CEU][hapmap];0.92[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9403992	0.91[ASN][1000 genomes]

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149141600-149157800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr6:149147200-149156600	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:149150000-149153000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:149150000-149153200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:149150000-149153200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:149150200-149153000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:149150400-149152800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:149150400-149152800	Enhancers	NHDF-Ad	bronchial
9	chr6:149150400-149153000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:149150400-149153200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:149150600-149159200	Weak transcription	Lung	lung
12	chr6:149150800-149154400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:149150800-149159200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:149150800-149176000	Weak transcription	Aorta	Aorta
15	chr6:149151200-149153000	Enhancers	Fetal Thymus	thymus
16	chr6:149151200-149153200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:149151200-149153200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr6:149151400-149157000	Weak transcription	NHLF	lung
19	chr6:149151400-149157800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr6:149151400-149158400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:149151400-149159400	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:149151600-149153000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
23	chr6:149151600-149157200	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr6:149151800-149157600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr6:149152000-149153000	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr6:149152000-149153000	Flanking Active TSS	NHEK	skin
27	chr6:149152200-149152800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:149152200-149152800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:149152200-149152800	Enhancers	Primary hematopoietic stem cells	blood
30	chr6:149152200-149152800	Enhancers	Osteobl	bone
31	chr6:149152400-149152800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
32	chr6:149152400-149153000	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr6:149152400-149153000	Enhancers	Primary T cells from cord blood	blood
34	chr6:149152400-149153000	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr6:149152400-149153200	Enhancers	Primary B cells from peripheral blood	blood
36	chr6:149152400-149153200	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr6:149152400-149153200	Enhancers	HMEC	breast
38	chr6:149152400-149156400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr6:149152600-149152800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
40	chr6:149152600-149152800	Flanking Active TSS	GM12878-XiMat	blood
41	chr6:149152600-149153000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr6:149152600-149153000	Flanking Active TSS	Dnd41	blood
43	chr6:149152600-149153200	Enhancers	Primary T cells fromperipheralblood	blood
44	chr6:149152600-149153400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
45	chr6:149152600-149157000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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