Variant report

Variant	rs9377166
Chromosome Location	chr6:149166697-149166698
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11155603	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12195548	0.90[AMR][1000 genomes]
rs1842772	0.96[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes]
rs2128333	0.96[MEX][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes]
rs2242298	0.88[AMR][1000 genomes]
rs9373575	0.81[TSI][hapmap]
rs9403988	0.84[TSI][hapmap]
rs9403990	1.00[MEX][hapmap];0.87[TSI][hapmap];0.88[AMR][1000 genomes]
rs9485334	0.99[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9377166	MFSD2B	trans	cerebellum	SCAN
rs9377166	EPM2A	cis	cerebellum	SCAN
rs9377166	EPM2A	cis	parietal	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149150800-149176000	Weak transcription	Aorta	Aorta
2	chr6:149153400-149168000	Weak transcription	Right Atrium	heart
3	chr6:149159400-149170000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:149159600-149168000	Weak transcription	Pancreas	Pancrea
5	chr6:149159600-149168400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:149160000-149178600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:149161800-149171600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:149162000-149168200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:149162000-149169800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr6:149162000-149171400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:149162000-149171600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:149162200-149168000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:149162200-149168400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:149162200-149170000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr6:149162200-149170000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:149162200-149171400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr6:149162200-149174800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:149162200-149174800	Weak transcription	HMEC	breast
19	chr6:149163800-149168000	Weak transcription	Lung	lung
20	chr6:149163800-149168200	Weak transcription	NHDF-Ad	bronchial
21	chr6:149164400-149168000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr6:149164800-149168000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:149165400-149168000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:149166400-149166800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:149166400-149173000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr6:149166600-149166800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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