Variant report

Variant	rs9403988
Chromosome Location	chr6:149145124-149145125
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149072010..149074630-chr6:149144870..149147037,2	K562	blood:
2	chr6:149139602..149142169-chr6:149143685..149146727,3	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12195548	0.93[EUR][1000 genomes]
rs13211473	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs1842771	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1842772	1.00[CEU][hapmap];0.95[GIH][hapmap];0.97[TSI][hapmap];0.94[EUR][1000 genomes]
rs2128333	1.00[CEU][hapmap];0.90[GIH][hapmap];0.97[TSI][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2242298	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs9373575	1.00[CEU][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9377166	0.84[TSI][hapmap]
rs9399665	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9403987	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9403989	1.00[JPT][hapmap]
rs9403990	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149135600-149147800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:149139600-149150400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:149141000-149146400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:149141200-149146400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:149141200-149146600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:149141200-149146600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:149141400-149151200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:149141400-149151200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:149141600-149148000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:149141600-149150000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:149141600-149150200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:149141600-149157800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr6:149143600-149145800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:149143600-149146400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:149144200-149145800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:149144400-149145600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr6:149144400-149145800	Enhancers	Primary B cells from peripheral blood	blood
18	chr6:149144600-149146600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:149144800-149145600	Enhancers	Primary B cells from cord blood	blood
20	chr6:149145000-149145800	Enhancers	Primary hematopoietic stem cells	blood

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