Variant report

Variant	rs9403991
Chromosome Location	chr6:149172549-149172550
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1384668	1.00[YRI][hapmap]
rs2242299	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2333863	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72999194	0.94[ASN][1000 genomes]
rs9377167	0.88[CEU][hapmap];0.90[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs9390613	0.81[CHB][hapmap]
rs9390614	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9390615	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9399667	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9403986	0.81[CHB][hapmap]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149150800-149176000	Weak transcription	Aorta	Aorta
2	chr6:149160000-149178600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:149162200-149174800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:149162200-149174800	Weak transcription	HMEC	breast
5	chr6:149166400-149173000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr6:149168600-149172600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:149168600-149177600	Weak transcription	Spleen	Spleen
8	chr6:149168600-149178400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:149168800-149172800	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:149168800-149178800	Weak transcription	Placenta	Placenta
11	chr6:149169200-149173000	Weak transcription	Stomach Mucosa	stomach
12	chr6:149169200-149178400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:149170200-149175000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:149170400-149173000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:149170400-149173000	Weak transcription	Ovary	ovary
16	chr6:149170400-149173400	Weak transcription	Lung	lung
17	chr6:149170400-149174800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:149170400-149175000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr6:149170400-149178800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr6:149170600-149172600	Weak transcription	Fetal Heart	heart
21	chr6:149171000-149172600	Weak transcription	Primary B cells from peripheral blood	blood
22	chr6:149171000-149174000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:149171400-149172800	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr6:149171400-149173200	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr6:149171400-149173200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr6:149171400-149173400	Enhancers	H1 Cell Line	embryonic stem cell
27	chr6:149171400-149174600	Enhancers	Pancreas	Pancrea
28	chr6:149171600-149173200	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr6:149171600-149173400	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr6:149171600-149173600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:149171800-149173400	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr6:149171800-149173800	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr6:149172000-149173400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:149172000-149173400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:149172000-149173600	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr6:149172200-149172600	Weak transcription	Fetal Brain Male	brain
37	chr6:149172200-149172600	Weak transcription	Fetal Stomach	stomach
38	chr6:149172200-149173200	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr6:149172200-149173400	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr6:149172200-149185600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr6:149172400-149173000	Weak transcription	Esophagus	oesophagus
42	chr6:149172400-149175200	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr6:149172400-149175200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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