Variant report

Variant	rs2333863
Chromosome Location	chr6:149123628-149123629
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149122779..149124966-chr6:149126823..149128900,2	K562	blood:
2	chr6:149120557..149122117-chr6:149122614..149125263,2	K562	blood:
3	chr6:149086530..149088907-chr6:149122938..149124830,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1384668	1.00[YRI][hapmap]
rs2242299	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs72999174	0.90[EUR][1000 genomes]
rs72999194	0.86[ASN][1000 genomes]
rs9377167	0.88[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs9390614	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9390615	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9399667	0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9403991	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149111400-149125000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:149112200-149124800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:149113200-149125000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:149115200-149125000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:149115400-149125000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:149115800-149144800	Weak transcription	Primary B cells from cord blood	blood
7	chr6:149116200-149133600	Weak transcription	Fetal Stomach	stomach
8	chr6:149116600-149124800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:149116600-149124800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:149120600-149125400	Weak transcription	Pancreas	Pancrea
11	chr6:149120800-149124200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:149121200-149124800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:149121600-149128600	Weak transcription	Stomach Mucosa	stomach
14	chr6:149121800-149130000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:149122000-149126400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:149122000-149126600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr6:149122000-149126800	Weak transcription	NHEK	skin
18	chr6:149122200-149131200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr6:149122400-149125000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:149122400-149125400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:149122400-149126400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:149122600-149125400	Weak transcription	Osteobl	bone
23	chr6:149122800-149124800	Weak transcription	Esophagus	oesophagus
24	chr6:149123000-149123800	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr6:149123000-149124800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr6:149123000-149124800	Weak transcription	Ovary	ovary
27	chr6:149123200-149125000	Enhancers	Colon Smooth Muscle	Colon
28	chr6:149123400-149123800	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr6:149123400-149124800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr6:149123400-149125000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr6:149123400-149125000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr6:149123400-149129000	Weak transcription	Primary B cells from peripheral blood	blood
33	chr6:149123400-149129200	Weak transcription	Spleen	Spleen

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