Variant report

Variant	rs9390614
Chromosome Location	chr6:149151485-149151486
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2242299	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2333863	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72999174	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72999194	0.92[ASN][1000 genomes]
rs9377167	0.88[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs9390615	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9399667	0.90[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs9403991	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149141600-149157800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr6:149147000-149152200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:149147200-149152200	Weak transcription	Osteobl	bone
4	chr6:149147200-149156600	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:149150000-149153000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:149150000-149153200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:149150000-149153200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:149150200-149151600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr6:149150200-149151600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:149150200-149152200	Enhancers	HMEC	breast
11	chr6:149150200-149153000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:149150400-149151600	Enhancers	Primary T cells fromperipheralblood	blood
13	chr6:149150400-149151800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr6:149150400-149151800	Enhancers	Primary B cells from peripheral blood	blood
15	chr6:149150400-149151800	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr6:149150400-149152000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr6:149150400-149152000	Enhancers	NHEK	skin
18	chr6:149150400-149152400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:149150400-149152600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr6:149150400-149152600	Weak transcription	Fetal Brain Male	brain
21	chr6:149150400-149152800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:149150400-149152800	Enhancers	NHDF-Ad	bronchial
23	chr6:149150400-149153000	Enhancers	Muscle Satellite Cultured Cells	--
24	chr6:149150400-149153200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:149150600-149151600	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr6:149150600-149151600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr6:149150600-149152000	Enhancers	Primary T cells from cord blood	blood
28	chr6:149150600-149159200	Weak transcription	Lung	lung
29	chr6:149150800-149152200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:149150800-149154400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:149150800-149159200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr6:149150800-149176000	Weak transcription	Aorta	Aorta
33	chr6:149151000-149151600	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr6:149151000-149151600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr6:149151000-149152000	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr6:149151000-149152400	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr6:149151200-149151800	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr6:149151200-149151800	Enhancers	Thymus	Thymus
39	chr6:149151200-149151800	Bivalent Enhancer	GM12878-XiMat	blood
40	chr6:149151200-149152000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr6:149151200-149153000	Enhancers	Fetal Thymus	thymus
42	chr6:149151200-149153200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:149151200-149153200	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr6:149151400-149151800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:149151400-149152000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
46	chr6:149151400-149152200	Weak transcription	Primary hematopoietic stem cells	blood
47	chr6:149151400-149152200	Flanking Active TSS	Dnd41	blood
48	chr6:149151400-149157000	Weak transcription	NHLF	lung
49	chr6:149151400-149157800	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr6:149151400-149158400	Weak transcription	H9 Cell Line	embryonic stem cell

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