Variant report

Variant	rs9399667
Chromosome Location	chr6:149157825-149157826
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149147443..149149859-chr6:149157328..149159145,2	MCF-7	breast:
2	chr19:12895147..12897254-chr6:149157096..149159627,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000267212	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1384668	1.00[YRI][hapmap]
rs2242299	0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs2333863	0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs72999174	0.89[AFR][1000 genomes]
rs72999194	0.93[ASN][1000 genomes]
rs9377167	0.85[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs9390614	0.90[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs9390615	0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs9403991	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149150600-149159200	Weak transcription	Lung	lung
2	chr6:149150800-149159200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:149150800-149176000	Weak transcription	Aorta	Aorta
4	chr6:149151400-149158400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:149151400-149159400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:149153400-149168000	Weak transcription	Right Atrium	heart
7	chr6:149156400-149159400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:149156600-149158000	Enhancers	Colon Smooth Muscle	Colon
9	chr6:149156600-149159600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:149156800-149158000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:149156800-149158000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:149156800-149158200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:149156800-149160600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:149157000-149158000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:149157000-149158000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:149157000-149158000	Enhancers	NHLF	lung
17	chr6:149157000-149160200	Enhancers	Hela-S3	cervix
18	chr6:149157200-149158200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:149157200-149158200	Enhancers	NH-A	brain
20	chr6:149157200-149158600	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr6:149157200-149160000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:149157400-149158000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:149157400-149158000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:149157400-149158200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:149157400-149158400	Enhancers	NHDF-Ad	bronchial
26	chr6:149157600-149158000	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr6:149157600-149158000	Enhancers	Muscle Satellite Cultured Cells	--
28	chr6:149157600-149159200	Weak transcription	Ovary	ovary
29	chr6:149157600-149159600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr6:149157600-149162000	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr6:149157800-149158200	Enhancers	H1 Cell Line	embryonic stem cell
32	chr6:149157800-149158200	Enhancers	NHEK	skin
33	chr6:149157800-149158200	Enhancers	Osteobl	bone
34	chr6:149157800-149158400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr6:149157800-149158600	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr6:149157800-149159400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:149157800-149159600	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr6:149157800-149160200	Weak transcription	Fetal Lung	lung

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