Variant report

Variant	rs9377167
Chromosome Location	chr6:149175496-149175497
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1384668	1.00[YRI][hapmap]
rs2242299	0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs2333863	0.88[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs72999194	0.86[ASN][1000 genomes]
rs9390613	0.90[CHB][hapmap]
rs9390614	0.88[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs9390615	0.88[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs9399667	0.85[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs9403986	0.91[CHB][hapmap]
rs9403991	0.88[CEU][hapmap];0.90[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149150800-149176000	Weak transcription	Aorta	Aorta
2	chr6:149160000-149178600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:149168600-149177600	Weak transcription	Spleen	Spleen
4	chr6:149168600-149178400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:149168800-149178800	Weak transcription	Placenta	Placenta
6	chr6:149169200-149178400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:149170400-149178800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:149172200-149185600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:149173200-149177400	Weak transcription	Gastric	stomach
10	chr6:149173400-149176000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr6:149173400-149176000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:149173400-149176400	Weak transcription	Fetal Thymus	thymus
13	chr6:149173600-149176000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:149173600-149176000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:149173600-149176800	Weak transcription	Lung	lung
16	chr6:149173600-149177600	Weak transcription	Fetal Stomach	stomach
17	chr6:149174000-149175600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:149174000-149176400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:149174400-149176800	Enhancers	Primary B cells from peripheral blood	blood
20	chr6:149174800-149176400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:149174800-149177000	Enhancers	Primary hematopoietic stem cells	blood
22	chr6:149174800-149177000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:149174800-149178200	Enhancers	NHEK	skin
24	chr6:149174800-149179600	Enhancers	HMEC	breast
25	chr6:149174800-149179800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:149175000-149175600	Enhancers	Fetal Heart	heart
27	chr6:149175000-149175800	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr6:149175000-149175800	Enhancers	Colon Smooth Muscle	Colon
29	chr6:149175000-149175800	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr6:149175000-149175800	Enhancers	Stomach Smooth Muscle	stomach
31	chr6:149175000-149176000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:149175000-149176000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:149175000-149176200	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr6:149175000-149177800	Enhancers	Pancreas	Pancrea
35	chr6:149175000-149178600	Enhancers	Stomach Mucosa	stomach
36	chr6:149175000-149179400	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr6:149175200-149175600	Enhancers	Fetal Lung	lung
38	chr6:149175200-149175800	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr6:149175200-149176000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr6:149175200-149176000	Enhancers	Ovary	ovary
41	chr6:149175200-149176600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr6:149175200-149176800	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr6:149175200-149177000	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr6:149175200-149177000	Enhancers	H9 Cell Line	embryonic stem cell
45	chr6:149175200-149177000	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr6:149175200-149177000	Enhancers	iPS-20b Cell Line	embryonic stem cell
47	chr6:149175400-149177000	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr6:149175400-149178200	Weak transcription	NHDF-Ad	bronchial
49	chr6:149175400-149178400	Weak transcription	HSMMtube	muscle

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