Variant report

Variant	rs753423
Chromosome Location	chr6:149131164-149131165
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149130550..149132989-chr6:149133739..149135543,2	K562	blood:
2	chr6:149125958..149127775-chr6:149130071..149132029,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11155597	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11155599	0.82[GIH][hapmap];1.00[JPT][hapmap];0.84[MKK][hapmap];0.92[YRI][hapmap];0.91[ASN][1000 genomes]
rs12525295	0.91[ASN][1000 genomes]
rs12526482	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12529264	0.93[ASW][hapmap];0.87[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4598105	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4895771	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4897053	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4897056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4897059	0.93[ASW][hapmap];0.87[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6916808	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7751854	1.00[JPT][hapmap]
rs9390613	0.83[GIH][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap]
rs9403986	0.86[GIH][hapmap];0.89[MEX][hapmap];0.84[TSI][hapmap];0.84[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs753423	C6orf97	cis	parietal	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149115800-149144800	Weak transcription	Primary B cells from cord blood	blood
2	chr6:149116200-149133600	Weak transcription	Fetal Stomach	stomach
3	chr6:149122200-149131200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:149125200-149133600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:149125600-149133600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:149125600-149136000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:149125800-149135200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:149125800-149137000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:149127400-149131400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:149127400-149132200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:149127400-149132600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:149127400-149133200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr6:149127400-149135200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:149128200-149135800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr6:149128200-149136800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr6:149128400-149135200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr6:149128800-149138000	Weak transcription	Ovary	ovary
18	chr6:149129600-149131200	Weak transcription	Stomach Mucosa	stomach
19	chr6:149129800-149131800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:149130200-149131200	Enhancers	H9 Cell Line	embryonic stem cell
21	chr6:149130200-149135200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:149130400-149131600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:149130400-149132200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr6:149130800-149131600	Enhancers	HSMMtube	muscle
25	chr6:149131000-149132200	Weak transcription	Right Atrium	heart

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