Variant report

Variant	rs4897059
Chromosome Location	chr6:149160016-149160017
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11155597	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11155599	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12525295	0.95[ASN][1000 genomes]
rs12526482	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529264	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4598105	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4895771	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4897053	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4897056	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6916808	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs753423	0.93[ASW][hapmap];0.87[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7751854	1.00[JPT][hapmap]
rs9390613	0.84[TSI][hapmap]
rs9403986	0.84[TSI][hapmap];0.80[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4897059	C6orf97	cis	parietal	SCAN

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149150800-149176000	Weak transcription	Aorta	Aorta
2	chr6:149153400-149168000	Weak transcription	Right Atrium	heart
3	chr6:149156800-149160600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:149157000-149160200	Enhancers	Hela-S3	cervix
5	chr6:149157600-149162000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr6:149157800-149160200	Weak transcription	Fetal Lung	lung
7	chr6:149158000-149160800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:149158000-149162800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:149158200-149160800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:149158200-149161200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:149158200-149161200	Weak transcription	NH-A	brain
12	chr6:149158400-149161800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:149158400-149162200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr6:149158600-149160600	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:149159400-149161600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:149159400-149162200	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr6:149159400-149170000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:149159600-149160200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr6:149159600-149160600	Weak transcription	HMEC	breast
20	chr6:149159600-149160800	Weak transcription	NHEK	skin
21	chr6:149159600-149162000	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr6:149159600-149163000	Weak transcription	Lung	lung
23	chr6:149159600-149168000	Weak transcription	Pancreas	Pancrea
24	chr6:149159600-149168400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:149159800-149160200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr6:149159800-149160800	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr6:149159800-149160800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:149159800-149161200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:149159800-149161400	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr6:149160000-149160400	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr6:149160000-149161200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:149160000-149161400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr6:149160000-149178600	Weak transcription	Rectal Smooth Muscle	rectum

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