Variant report

Variant	rs6919171
Chromosome Location	chr6:127716995-127716996
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1512453	1.00[AMR][1000 genomes]
rs6904065	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6910819	1.00[AMR][1000 genomes]
rs6911159	1.00[AMR][1000 genomes]
rs6911725	1.00[AMR][1000 genomes]
rs6917585	0.84[AFR][1000 genomes]
rs6936212	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6942082	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7746454	1.00[AMR][1000 genomes]
rs7771652	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7776226	1.00[AMR][1000 genomes]
rs7776360	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604641	chr6:127657099-127719062	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127712600-127719400	Weak transcription	Psoas Muscle	Psoas
2	chr6:127712800-127718200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:127712800-127718200	Weak transcription	Adipose Nuclei	Adipose
4	chr6:127713600-127719200	Weak transcription	Fetal Stomach	stomach
5	chr6:127713800-127718400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:127713800-127718400	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:127713800-127718400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr6:127713800-127718400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:127714600-127718200	Weak transcription	HMEC	breast
10	chr6:127714600-127718400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:127714600-127718400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:127714600-127718400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:127715000-127718200	Weak transcription	NHEK	skin
14	chr6:127716800-127717000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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