Variant report

Variant	rs7771652
Chromosome Location	chr6:127692105-127692106
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1512453	1.00[AMR][1000 genomes]
rs6904065	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6910819	1.00[AMR][1000 genomes]
rs6911159	1.00[AMR][1000 genomes]
rs6911725	1.00[AMR][1000 genomes]
rs6917585	0.89[AFR][1000 genomes]
rs6919171	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6936212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6942082	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7746454	1.00[AMR][1000 genomes]
rs7749348	1.00[AMR][1000 genomes]
rs7776226	1.00[AMR][1000 genomes]
rs7776360	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604641	chr6:127657099-127719062	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv965762	chr6:127669294-127698325	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127666000-127704000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:127688400-127697800	Weak transcription	HSMM	muscle
3	chr6:127689800-127694600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr6:127691800-127692400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:127691800-127692600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:127691800-127695600	Weak transcription	Ovary	ovary
7	chr6:127692000-127693400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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