Variant report

Variant	rs6921496
Chromosome Location	chr6:147568513-147568514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147563079..147565638-chr6:147567520..147569543,2	K562	blood:
2	chr6:147563409..147564975-chr6:147566819..147568813,2	MCF-7	breast:
3	chr6:147565112..147568685-chr6:147569145..147570967,3	K562	blood:
4	chr6:147565658..147568685-chr6:147568738..147571330,4	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1034245	0.84[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10457811	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10499247	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076671	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17076689	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41285881	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58371914	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58638359	0.91[EUR][1000 genomes]
rs61120449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73787171	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73788817	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73788833	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73788845	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73788902	0.87[AFR][1000 genomes]
rs7743335	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322096	0.88[LWK][hapmap]
rs9485155	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9485159	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497729	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497738	0.86[AFR][1000 genomes]
rs9497740	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497747	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497762	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886752	chr6:147443480-147729477	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv886753	chr6:147526508-147680291	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv470864	chr6:147539165-147709179	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv886754	chr6:147539165-147729477	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv604840	chr6:147539165-147730324	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	esv1832155	chr6:147554900-147715464	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147526000-147572200	Weak transcription	Lung	lung
2	chr6:147527200-147570000	Weak transcription	Left Ventricle	heart
3	chr6:147527200-147572000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:147527200-147572200	Weak transcription	Esophagus	oesophagus
5	chr6:147527400-147576400	Weak transcription	HSMMtube	muscle
6	chr6:147527800-147586800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:147528800-147572000	Weak transcription	A549	lung
8	chr6:147529000-147572200	Weak transcription	Aorta	Aorta
9	chr6:147529400-147571800	Weak transcription	Fetal Brain Male	brain
10	chr6:147530000-147572000	Weak transcription	NHEK	skin
11	chr6:147533200-147572200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:147534000-147572200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:147537600-147572200	Weak transcription	Ovary	ovary
14	chr6:147537800-147571600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr6:147538200-147572200	Weak transcription	Spleen	Spleen
16	chr6:147538400-147572200	Weak transcription	Fetal Lung	lung
17	chr6:147538800-147572200	Weak transcription	Placenta	Placenta
18	chr6:147540200-147569600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:147540200-147572000	Weak transcription	Thymus	Thymus
20	chr6:147542400-147590800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr6:147543800-147572200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr6:147543800-147588800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr6:147544000-147572200	Weak transcription	GM12878-XiMat	blood
24	chr6:147544200-147574200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr6:147544400-147574800	Weak transcription	HepG2	liver
26	chr6:147545600-147571600	Weak transcription	Fetal Muscle Leg	muscle
27	chr6:147545600-147617000	Weak transcription	Small Intestine	intestine
28	chr6:147549200-147572200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:147549400-147616800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr6:147549600-147572200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr6:147549600-147578200	Weak transcription	Fetal Heart	heart
32	chr6:147549600-147584600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr6:147549600-147587200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr6:147552600-147591800	Weak transcription	HUVEC	blood vessel
35	chr6:147554600-147590000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr6:147556200-147574600	Strong transcription	Muscle Satellite Cultured Cells	--
37	chr6:147556400-147568800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr6:147556400-147572200	Weak transcription	Brain Angular Gyrus	brain
39	chr6:147556400-147572200	Weak transcription	Gastric	stomach
40	chr6:147556800-147568600	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr6:147557000-147569800	Weak transcription	Fetal Brain Female	brain
42	chr6:147557200-147572200	Weak transcription	Brain Germinal Matrix	brain
43	chr6:147557400-147572000	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr6:147557600-147571600	Weak transcription	Liver	Liver
45	chr6:147557600-147572200	Weak transcription	Colonic Mucosa	Colon
46	chr6:147558000-147572200	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr6:147559600-147570000	Weak transcription	Fetal Stomach	stomach
48	chr6:147559600-147570400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:147559600-147571400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr6:147559600-147572000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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