Variant report

Variant	rs7743335
Chromosome Location	chr6:147584626-147584627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:147578196..147582032-chr6:147582354..147586233,5	K562	blood:
2	chr6:147583523..147586879-chr6:147592459..147595708,4	K562	blood:
3	chr6:147584140..147585793-chr6:147589242..147590787,2	K562	blood:
4	chr6:147583404..147586719-chr6:147587995..147591992,4	K562	blood:
5	chr6:147579954..147581876-chr6:147584142..147585790,2	K562	blood:
6	chr6:147555348..147557079-chr6:147583607..147585757,2	K562	blood:
7	chr6:147583523..147585752-chr6:147591147..147593959,2	K562	blood:

No data

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1034245	0.84[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10457811	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10499247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076671	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17076689	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41285881	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58371914	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58638359	0.91[EUR][1000 genomes]
rs61120449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921496	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73787171	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73788817	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73788833	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73788845	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73788902	0.93[AFR][1000 genomes]
rs9322096	0.88[LWK][hapmap]
rs9485155	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9485159	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497729	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497738	0.91[AFR][1000 genomes]
rs9497740	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497747	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497762	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886752	chr6:147443480-147729477	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv886753	chr6:147526508-147680291	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv470864	chr6:147539165-147709179	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv886754	chr6:147539165-147729477	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv604840	chr6:147539165-147730324	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	esv1832155	chr6:147554900-147715464	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv886755	chr6:147577646-147729477	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
10	nsv886756	chr6:147580697-147729477	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147527800-147586800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr6:147542400-147590800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:147543800-147588800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:147545600-147617000	Weak transcription	Small Intestine	intestine
5	chr6:147549400-147616800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr6:147549600-147587200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:147552600-147591800	Weak transcription	HUVEC	blood vessel
8	chr6:147554600-147590000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr6:147561600-147600800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr6:147562600-147599800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr6:147564000-147586800	Weak transcription	HMEC	breast
12	chr6:147564400-147604600	Weak transcription	NHLF	lung
13	chr6:147564400-147619000	Weak transcription	Hela-S3	cervix
14	chr6:147564600-147608800	Weak transcription	NH-A	brain
15	chr6:147564600-147617000	Weak transcription	Fetal Kidney	kidney
16	chr6:147570200-147587200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr6:147570600-147609000	Weak transcription	Brain Substantia Nigra	brain
18	chr6:147571400-147599200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr6:147571400-147599400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:147572400-147590000	Weak transcription	Primary T cells from cord blood	blood
21	chr6:147572600-147588400	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr6:147572600-147588400	Weak transcription	Primary B cells from peripheral blood	blood
23	chr6:147572600-147605800	Weak transcription	Brain Anterior Caudate	brain
24	chr6:147572600-147609600	Weak transcription	Thymus	Thymus
25	chr6:147572600-147610200	Weak transcription	Esophagus	oesophagus
26	chr6:147572800-147588400	Weak transcription	Liver	Liver
27	chr6:147572800-147599000	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr6:147572800-147605800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr6:147572800-147617000	Weak transcription	Right Ventricle	heart
30	chr6:147573000-147585200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr6:147573000-147586800	Weak transcription	Fetal Muscle Trunk	muscle
32	chr6:147573000-147586800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr6:147573000-147588000	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr6:147573000-147589600	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr6:147573000-147594200	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr6:147573000-147599200	Weak transcription	Rectal Smooth Muscle	rectum
37	chr6:147573000-147599800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr6:147573000-147599800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr6:147573000-147616600	Weak transcription	Ovary	ovary
40	chr6:147573000-147616800	Weak transcription	Aorta	Aorta
41	chr6:147573200-147585400	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr6:147573200-147587000	Weak transcription	Adipose Nuclei	Adipose
43	chr6:147573200-147588600	Weak transcription	Fetal Thymus	thymus
44	chr6:147573200-147599200	Weak transcription	Fetal Lung	lung
45	chr6:147573200-147599800	Weak transcription	Left Ventricle	heart
46	chr6:147573200-147610000	Weak transcription	Fetal Stomach	stomach
47	chr6:147573200-147617000	Weak transcription	Spleen	Spleen
48	chr6:147573400-147586600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr6:147573400-147588400	Weak transcription	Placenta	Placenta
50	chr6:147573400-147609200	Weak transcription	Pancreas	Pancrea

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