Variant report

Variant	rs9485159
Chromosome Location	chr6:147605198-147605199
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147534848..147537270-chr6:147604730..147607356,2	K562	blood:
2	chr6:147603218..147605835-chr6:147644641..147647408,2	K562	blood:
3	chr6:147603613..147606358-chr6:147670525..147673088,2	K562	blood:
4	chr6:147522804..147525350-chr6:147604658..147607399,2	MCF-7	breast:
5	chr6:147394305..147395892-chr6:147603486..147605338,2	K562	blood:

Variant related genes	Relation type
ENSG00000233452	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1034245	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10457811	0.92[ASN][1000 genomes]
rs10499247	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076671	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17076689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41285881	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58371914	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58638359	0.91[EUR][1000 genomes]
rs61120449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921496	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73787171	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73788817	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73788833	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73788845	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73788902	0.96[AFR][1000 genomes]
rs7743335	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9485155	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9497729	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497738	0.94[AFR][1000 genomes]
rs9497740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497747	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497762	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886752	chr6:147443480-147729477	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv886753	chr6:147526508-147680291	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv470864	chr6:147539165-147709179	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv886754	chr6:147539165-147729477	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv604840	chr6:147539165-147730324	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	esv1832155	chr6:147554900-147715464	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv886755	chr6:147577646-147729477	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
10	nsv886756	chr6:147580697-147729477	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
11	nsv830839	chr6:147584914-147757264	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
12	nsv522406	chr6:147591022-147635413	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv886757	chr6:147591022-147729477	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147545600-147617000	Weak transcription	Small Intestine	intestine
2	chr6:147549400-147616800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr6:147564400-147619000	Weak transcription	Hela-S3	cervix
4	chr6:147564600-147608800	Weak transcription	NH-A	brain
5	chr6:147564600-147617000	Weak transcription	Fetal Kidney	kidney
6	chr6:147570600-147609000	Weak transcription	Brain Substantia Nigra	brain
7	chr6:147572600-147605800	Weak transcription	Brain Anterior Caudate	brain
8	chr6:147572600-147609600	Weak transcription	Thymus	Thymus
9	chr6:147572600-147610200	Weak transcription	Esophagus	oesophagus
10	chr6:147572800-147605800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:147572800-147617000	Weak transcription	Right Ventricle	heart
12	chr6:147573000-147616600	Weak transcription	Ovary	ovary
13	chr6:147573000-147616800	Weak transcription	Aorta	Aorta
14	chr6:147573200-147610000	Weak transcription	Fetal Stomach	stomach
15	chr6:147573200-147617000	Weak transcription	Spleen	Spleen
16	chr6:147573400-147609200	Weak transcription	Pancreas	Pancrea
17	chr6:147573800-147608600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:147574400-147616600	Weak transcription	Fetal Brain Female	brain
19	chr6:147576800-147609800	Weak transcription	HSMMtube	muscle
20	chr6:147578200-147616800	Weak transcription	Fetal Muscle Leg	muscle
21	chr6:147579200-147610000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:147579400-147609800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr6:147584400-147684600	Weak transcription	Brain Angular Gyrus	brain
24	chr6:147584800-147606000	Weak transcription	Brain Hippocampus Middle	brain
25	chr6:147585800-147617200	Weak transcription	Fetal Brain Male	brain
26	chr6:147587000-147618000	Weak transcription	Psoas Muscle	Psoas
27	chr6:147587600-147609400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr6:147588600-147616800	Weak transcription	Brain Germinal Matrix	brain
29	chr6:147588800-147617000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr6:147589400-147608600	Weak transcription	NHEK	skin
31	chr6:147590400-147616400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:147593200-147608600	Weak transcription	A549	lung
33	chr6:147593400-147606000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr6:147595000-147610000	Weak transcription	Lung	lung
35	chr6:147595800-147616600	Weak transcription	Colonic Mucosa	Colon
36	chr6:147597800-147605400	Strong transcription	HSMM	muscle
37	chr6:147598000-147617000	Strong transcription	K562	blood
38	chr6:147598200-147616600	Weak transcription	Gastric	stomach
39	chr6:147599400-147617000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:147599600-147617000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr6:147600000-147605800	Weak transcription	GM12878-XiMat	blood
42	chr6:147600200-147605200	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr6:147600200-147606000	Weak transcription	Liver	Liver
44	chr6:147600200-147606000	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr6:147600200-147608600	Weak transcription	HUVEC	blood vessel
46	chr6:147600200-147608800	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr6:147600200-147609000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr6:147600200-147609200	Weak transcription	Left Ventricle	heart
49	chr6:147600200-147615000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr6:147600200-147616400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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