Variant report

Variant	rs9497740
Chromosome Location	chr6:147610753-147610754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147598437..147600865-chr6:147608002..147611556,3	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1034245	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10457811	0.92[ASN][1000 genomes]
rs10499247	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076671	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17076689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41285881	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58371914	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58638359	0.91[EUR][1000 genomes]
rs61120449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921496	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73787171	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73788817	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73788833	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73788845	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73788902	0.96[AFR][1000 genomes]
rs7743335	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9485155	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9485159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497729	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497738	0.94[AFR][1000 genomes]
rs9497747	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497762	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886752	chr6:147443480-147729477	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv886753	chr6:147526508-147680291	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv470864	chr6:147539165-147709179	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv886754	chr6:147539165-147729477	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv604840	chr6:147539165-147730324	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	esv1832155	chr6:147554900-147715464	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv886755	chr6:147577646-147729477	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv886756	chr6:147580697-147729477	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
9	nsv830839	chr6:147584914-147757264	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
10	nsv522406	chr6:147591022-147635413	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv886757	chr6:147591022-147729477	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147545600-147617000	Weak transcription	Small Intestine	intestine
2	chr6:147549400-147616800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr6:147564400-147619000	Weak transcription	Hela-S3	cervix
4	chr6:147564600-147617000	Weak transcription	Fetal Kidney	kidney
5	chr6:147572800-147617000	Weak transcription	Right Ventricle	heart
6	chr6:147573000-147616600	Weak transcription	Ovary	ovary
7	chr6:147573000-147616800	Weak transcription	Aorta	Aorta
8	chr6:147573200-147617000	Weak transcription	Spleen	Spleen
9	chr6:147574400-147616600	Weak transcription	Fetal Brain Female	brain
10	chr6:147578200-147616800	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:147584400-147684600	Weak transcription	Brain Angular Gyrus	brain
12	chr6:147585800-147617200	Weak transcription	Fetal Brain Male	brain
13	chr6:147587000-147618000	Weak transcription	Psoas Muscle	Psoas
14	chr6:147588600-147616800	Weak transcription	Brain Germinal Matrix	brain
15	chr6:147588800-147617000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:147590400-147616400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:147595800-147616600	Weak transcription	Colonic Mucosa	Colon
18	chr6:147598000-147617000	Strong transcription	K562	blood
19	chr6:147598200-147616600	Weak transcription	Gastric	stomach
20	chr6:147599400-147617000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:147599600-147617000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:147600200-147615000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr6:147600200-147616400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:147600200-147616400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr6:147600200-147616600	Weak transcription	Adipose Nuclei	Adipose
26	chr6:147600200-147616600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr6:147600200-147616800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr6:147600200-147618800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr6:147600400-147616600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:147600800-147616200	Weak transcription	Primary B cells from peripheral blood	blood
31	chr6:147600800-147617000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr6:147601000-147619000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:147601200-147616600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr6:147601200-147617000	Weak transcription	Fetal Lung	lung
35	chr6:147601400-147616800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr6:147601400-147617200	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr6:147601600-147625200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr6:147601800-147612400	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr6:147603200-147617000	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr6:147604000-147616600	Weak transcription	Primary B cells from cord blood	blood
41	chr6:147604800-147616800	Weak transcription	Fetal Thymus	thymus
42	chr6:147605000-147613000	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr6:147605000-147614600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr6:147605000-147616600	Weak transcription	HepG2	liver
45	chr6:147605400-147611800	Weak transcription	HSMM	muscle
46	chr6:147606000-147617000	Weak transcription	Stomach Mucosa	stomach
47	chr6:147606400-147611200	Weak transcription	GM12878-XiMat	blood
48	chr6:147606400-147614200	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr6:147606400-147616600	Weak transcription	Liver	Liver
50	chr6:147606400-147616800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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