Variant report

Variant	rs6922028
Chromosome Location	chr6:150325568-150325569
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11155692	0.82[EUR][1000 genomes]
rs11155693	0.82[EUR][1000 genomes]
rs12191283	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13192866	0.82[EUR][1000 genomes]
rs1853666	0.86[EUR][1000 genomes]
rs1853667	0.87[EUR][1000 genomes]
rs2224893	0.82[EUR][1000 genomes]
rs35387103	0.83[ASN][1000 genomes]
rs3963990	0.92[EUR][1000 genomes]
rs7757868	0.95[AFR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9371624	0.92[EUR][1000 genomes]
rs9383632	0.81[EUR][1000 genomes]
rs9383633	0.81[EUR][1000 genomes]
rs9384023	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9384029	0.80[EUR][1000 genomes]
rs9384030	0.93[EUR][1000 genomes]
rs9397110	0.81[EUR][1000 genomes]
rs9397541	0.92[EUR][1000 genomes]
rs9478352	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv970176	chr6:150319173-150343329	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv7375	chr6:150324114-150388625	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3344440	chr6:150324131-150388650	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150319800-150325600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:150324600-150325600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:150324800-150325600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:150324800-150325600	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr6:150325000-150325600	Enhancers	Primary B cells from peripheral blood	blood
6	chr6:150325000-150325600	Enhancers	Primary T cells fromperipheralblood	blood
7	chr6:150325000-150325600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr6:150325000-150326000	Flanking Active TSS	Dnd41	blood
9	chr6:150325200-150325600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:150325200-150325600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
11	chr6:150325200-150325600	Enhancers	Primary B cells from cord blood	blood
12	chr6:150325200-150325600	Enhancers	Primary T cells from cord blood	blood
13	chr6:150325200-150325600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:150325200-150325600	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr6:150325200-150325600	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr6:150325200-150325600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr6:150325200-150325600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:150325200-150325800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
19	chr6:150325200-150326000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
20	chr6:150325200-150327000	Active TSS	Hela-S3	cervix
21	chr6:150325400-150325600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
22	chr6:150325400-150325600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:150325400-150325600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
24	chr6:150325400-150325600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:150325400-150325600	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr6:150325400-150325600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:150325400-150325600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:150325400-150325600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:150325400-150325600	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
30	chr6:150325400-150325600	Bivalent Enhancer	Brain Substantia Nigra	brain
31	chr6:150325400-150325600	Bivalent Enhancer	Duodenum Mucosa	Duodenum
32	chr6:150325400-150325600	Bivalent Enhancer	Left Ventricle	heart
33	chr6:150325400-150325600	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
34	chr6:150325400-150325600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
35	chr6:150325400-150325600	Bivalent Enhancer	Stomach Smooth Muscle	stomach
36	chr6:150325400-150325600	Bivalent Enhancer	Thymus	Thymus
37	chr6:150325400-150325600	Flanking Active TSS	A549	lung
38	chr6:150325400-150325600	Enhancers	K562	blood
39	chr6:150325400-150325600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
40	chr6:150325400-150325800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
41	chr6:150325400-150325800	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:150325400-150325800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:150325400-150325800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
44	chr6:150325400-150325800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
45	chr6:150325400-150325800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr6:150325400-150325800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:150325400-150325800	Enhancers	Primary hematopoietic stem cells	blood
48	chr6:150325400-150325800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr6:150325400-150325800	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
50	chr6:150325400-150326000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

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