Variant report

Variant	rs13192866
Chromosome Location	chr6:150312899-150312900
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150311706..150314148-chr6:150319764..150322563,2	K562	blood:
2	chr6:150295506..150297191-chr6:150310699..150313123,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11155692	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11155693	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964763	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11967324	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11967376	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11967392	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11969666	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11969681	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12191283	0.80[EUR][1000 genomes]
rs13199630	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13214660	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1359342	0.85[EUR][1000 genomes]
rs1830833	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1830839	0.81[EUR][1000 genomes]
rs1853666	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1853667	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2224893	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275092	0.89[ASN][1000 genomes]
rs2343265	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3860819	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3888034	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3963990	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4472362	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6922028	0.82[EUR][1000 genomes]
rs6940683	0.86[ASN][1000 genomes]
rs7739781	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762217	0.88[ASN][1000 genomes]
rs9322232	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322237	0.86[EUR][1000 genomes]
rs9371624	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9383632	0.93[EUR][1000 genomes]
rs9383633	0.93[EUR][1000 genomes]
rs9383996	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9384002	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384003	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384010	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384011	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384023	0.81[EUR][1000 genomes]
rs9384030	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9384033	0.89[ASN][1000 genomes]
rs9397110	0.93[EUR][1000 genomes]
rs9397517	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9397521	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9397541	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs942513	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs942514	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9478336	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9479328	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9479329	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9479330	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9479331	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9479332	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9479339	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9479340	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9479341	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9479343	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150309800-150313600	Bivalent/Poised TSS	Thymus	Thymus
2	chr6:150310000-150313400	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
3	chr6:150310400-150313000	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
4	chr6:150311000-150313000	Bivalent Enhancer	Placenta	Placenta
5	chr6:150311000-150313200	Flanking Bivalent TSS/Enh	Dnd41	blood
6	chr6:150311200-150313000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
7	chr6:150312400-150313000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:150312400-150313000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
9	chr6:150312400-150313000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:150312400-150313000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:150312400-150313000	Bivalent Enhancer	Adipose Nuclei	Adipose
12	chr6:150312400-150313000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr6:150312400-150313200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
14	chr6:150312400-150313200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chr6:150312400-150313200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:150312400-150313200	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
17	chr6:150312400-150313200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
18	chr6:150312400-150313400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:150312600-150313000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:150312600-150313000	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
21	chr6:150312600-150313200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:150312600-150313200	Bivalent Enhancer	Primary B cells from cord blood	blood
23	chr6:150312600-150313200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
24	chr6:150312600-150313200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
25	chr6:150312600-150313200	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
26	chr6:150312600-150313200	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:150312600-150313200	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
28	chr6:150312800-150313200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
29	chr6:150312800-150313200	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
30	chr6:150312800-150313200	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
31	chr6:150312800-150313600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell

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