Variant report

Variant	rs3888034
Chromosome Location	chr6:150320732-150320733
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150311706..150314148-chr6:150319764..150322563,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11155692	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11155693	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11964763	0.94[ASN][1000 genomes]
rs11967324	0.92[ASN][1000 genomes]
rs11967376	0.95[ASN][1000 genomes]
rs11967392	0.95[ASN][1000 genomes]
rs11969666	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11969681	0.95[ASN][1000 genomes]
rs13192866	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13199630	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13214660	0.95[ASN][1000 genomes]
rs1359342	0.96[EUR][1000 genomes]
rs1830833	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1830839	0.91[EUR][1000 genomes]
rs1853666	0.91[ASN][1000 genomes]
rs1853667	0.91[ASN][1000 genomes]
rs2224893	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2275092	0.91[ASN][1000 genomes]
rs2343265	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3860819	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3963990	0.91[ASN][1000 genomes]
rs4472362	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6940683	0.87[ASN][1000 genomes]
rs7739781	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7762217	0.89[ASN][1000 genomes]
rs9322232	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9322237	0.97[EUR][1000 genomes]
rs9371624	0.91[ASN][1000 genomes]
rs9383632	0.89[EUR][1000 genomes]
rs9383633	0.89[EUR][1000 genomes]
rs9383996	0.94[ASN][1000 genomes]
rs9384002	0.96[ASN][1000 genomes]
rs9384003	0.96[ASN][1000 genomes]
rs9384010	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9384011	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9384029	0.90[EUR][1000 genomes]
rs9384030	0.91[ASN][1000 genomes]
rs9384033	0.91[ASN][1000 genomes]
rs9397110	0.89[EUR][1000 genomes]
rs9397517	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9397521	0.95[ASN][1000 genomes]
rs9397541	0.91[ASN][1000 genomes]
rs942513	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs942514	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9478336	0.95[ASN][1000 genomes]
rs9479328	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9479329	0.96[ASN][1000 genomes]
rs9479330	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9479331	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9479332	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9479339	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9479340	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9479341	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9479343	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv970176	chr6:150319173-150343329	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150315000-150324800	Weak transcription	Dnd41	blood
2	chr6:150316800-150320800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:150318200-150325400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:150319000-150322600	Weak transcription	Thymus	Thymus
5	chr6:150319600-150321600	Weak transcription	Fetal Thymus	thymus
6	chr6:150319800-150325600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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