Variant report

Variant	rs9397110
Chromosome Location	chr6:150314004-150314005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150311706..150314148-chr6:150319764..150322563,2	K562	blood:
2	chr6:150313760..150316754-chr6:150324544..150327213,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000218358	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11155692	0.93[EUR][1000 genomes]
rs11155693	0.93[EUR][1000 genomes]
rs11964763	0.83[EUR][1000 genomes]
rs11967324	0.81[EUR][1000 genomes]
rs11967376	0.83[EUR][1000 genomes]
rs11967392	0.83[EUR][1000 genomes]
rs11969666	0.83[EUR][1000 genomes]
rs11969681	0.83[EUR][1000 genomes]
rs13192866	0.93[EUR][1000 genomes]
rs13199630	0.83[EUR][1000 genomes]
rs13214660	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1359342	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1830833	0.83[EUR][1000 genomes]
rs1830839	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1853666	0.81[EUR][1000 genomes]
rs1853667	0.82[EUR][1000 genomes]
rs2224893	0.93[EUR][1000 genomes]
rs2343265	0.83[EUR][1000 genomes]
rs3860819	0.82[EUR][1000 genomes]
rs3888034	0.89[EUR][1000 genomes]
rs4472362	0.83[EUR][1000 genomes]
rs6922028	0.81[EUR][1000 genomes]
rs7739781	0.83[EUR][1000 genomes]
rs7757868	0.80[GIH][hapmap]
rs9322232	0.81[EUR][1000 genomes]
rs9322237	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9383632	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9383633	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9383996	0.81[EUR][1000 genomes]
rs9384002	0.83[EUR][1000 genomes]
rs9384003	0.83[EUR][1000 genomes]
rs9384010	0.83[EUR][1000 genomes]
rs9384011	0.83[EUR][1000 genomes]
rs9384029	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9397517	0.81[EUR][1000 genomes]
rs9397521	0.83[EUR][1000 genomes]
rs942513	0.83[EUR][1000 genomes]
rs942514	0.83[EUR][1000 genomes]
rs9478336	0.83[EUR][1000 genomes]
rs9479328	0.83[EUR][1000 genomes]
rs9479329	0.83[EUR][1000 genomes]
rs9479330	0.83[EUR][1000 genomes]
rs9479331	0.83[EUR][1000 genomes]
rs9479332	0.83[EUR][1000 genomes]
rs9479339	0.82[EUR][1000 genomes]
rs9479340	0.83[EUR][1000 genomes]
rs9479341	0.83[EUR][1000 genomes]
rs9479343	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9397110	RAET1G	cis	cerebellum	SCAN
rs9397110	KIF1C	trans	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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