Variant report

Variant	rs7739781
Chromosome Location	chr6:150312232-150312233
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150311706..150314148-chr6:150319764..150322563,2	K562	blood:
2	chr6:150295506..150297191-chr6:150310699..150313123,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11155692	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11155693	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964763	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11967324	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11967376	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11967392	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11969666	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11969681	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13192866	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13199630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13214660	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1830833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1853666	0.92[ASN][1000 genomes]
rs1853667	0.92[ASN][1000 genomes]
rs2224893	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275092	0.89[ASN][1000 genomes]
rs2343265	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3860819	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3888034	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3963990	0.89[ASN][1000 genomes]
rs4472362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6940683	0.86[ASN][1000 genomes]
rs7762217	0.88[ASN][1000 genomes]
rs9322232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9371624	0.89[ASN][1000 genomes]
rs9383632	0.83[EUR][1000 genomes]
rs9383633	0.83[EUR][1000 genomes]
rs9383996	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9384002	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384003	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384010	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384030	0.89[ASN][1000 genomes]
rs9384033	0.89[ASN][1000 genomes]
rs9397110	0.83[EUR][1000 genomes]
rs9397517	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9397521	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9397541	0.90[ASN][1000 genomes]
rs942513	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs942514	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9478336	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9479328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9479329	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9479330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9479331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9479332	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9479339	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9479340	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9479341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9479343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150309800-150313600	Bivalent/Poised TSS	Thymus	Thymus
2	chr6:150310000-150313400	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
3	chr6:150310400-150313000	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
4	chr6:150310800-150312400	Enhancers	Gastric	stomach
5	chr6:150310800-150312400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
6	chr6:150310800-150312600	Bivalent Enhancer	Liver	Liver
7	chr6:150310800-150312600	Bivalent Enhancer	Fetal Muscle Leg	muscle
8	chr6:150310800-150312800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
9	chr6:150311000-150312600	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
10	chr6:150311000-150312600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
11	chr6:150311000-150312800	Bivalent Enhancer	Fetal Brain Male	brain
12	chr6:150311000-150313000	Bivalent Enhancer	Placenta	Placenta
13	chr6:150311000-150313200	Flanking Bivalent TSS/Enh	Dnd41	blood
14	chr6:150311200-150312400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:150311200-150312400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
16	chr6:150311200-150312400	Bivalent/Poised TSS	A549	lung
17	chr6:150311200-150312400	Flanking Bivalent TSS/Enh	HMEC	breast
18	chr6:150311200-150312600	Flanking Bivalent TSS/Enh	Primary T killer memory cells from peripheral blood	blood
19	chr6:150311200-150312800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:150311200-150313000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
21	chr6:150311400-150312400	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
22	chr6:150311400-150312400	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
23	chr6:150311400-150312400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:150311400-150312400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:150311400-150312400	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
26	chr6:150311400-150312400	Bivalent Enhancer	Spleen	Spleen
27	chr6:150311400-150312400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
28	chr6:150311400-150312600	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
29	chr6:150311400-150312600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
30	chr6:150311400-150312800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
31	chr6:150311400-150312800	Bivalent Enhancer	Colon Smooth Muscle	Colon
32	chr6:150311400-150312800	Bivalent Enhancer	Esophagus	oesophagus
33	chr6:150311600-150312400	Flanking Bivalent TSS/Enh	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:150311600-150312400	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:150311600-150312400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:150311600-150312400	Bivalent/Poised TSS	Brain Anterior Caudate	brain
37	chr6:150311600-150312400	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
38	chr6:150311600-150312400	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
39	chr6:150311600-150312400	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
40	chr6:150311600-150312600	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
41	chr6:150311600-150312600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
42	chr6:150311600-150312600	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood
43	chr6:150311800-150312400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr6:150311800-150312400	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:150311800-150312400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
46	chr6:150311800-150312400	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
47	chr6:150311800-150312400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
48	chr6:150311800-150312400	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 2	blood
49	chr6:150311800-150312400	Flanking Bivalent TSS/Enh	Primary T helper naive cells from peripheral blood	blood
50	chr6:150311800-150312400	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 1	blood

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