Variant report

Variant	rs1853666
Chromosome Location	chr6:150316073-150316074
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:57921631..57923250-chr6:150315332..150317650,2	MCF-7	breast:
2	chr6:150313760..150316754-chr6:150324544..150327213,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000218358	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11155692	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11155693	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11964763	0.91[ASN][1000 genomes]
rs11967324	0.88[ASN][1000 genomes]
rs11967376	0.91[ASN][1000 genomes]
rs11967392	0.91[ASN][1000 genomes]
rs11969666	0.91[ASN][1000 genomes]
rs11969681	0.91[ASN][1000 genomes]
rs12191283	0.91[EUR][1000 genomes]
rs13192866	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13199630	0.92[ASN][1000 genomes]
rs13214660	0.91[ASN][1000 genomes]
rs1830833	0.92[ASN][1000 genomes]
rs1853667	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1886363	0.82[ASN][1000 genomes]
rs1889554	0.81[ASN][1000 genomes]
rs2224893	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2275092	0.97[ASN][1000 genomes]
rs2343265	0.90[ASN][1000 genomes]
rs3860819	0.92[ASN][1000 genomes]
rs3888034	0.91[ASN][1000 genomes]
rs3963990	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4472362	0.90[ASN][1000 genomes]
rs6922028	0.86[EUR][1000 genomes]
rs6940683	0.93[ASN][1000 genomes]
rs7739781	0.92[ASN][1000 genomes]
rs7757868	0.90[EUR][1000 genomes]
rs7762217	0.96[ASN][1000 genomes]
rs9322232	0.92[ASN][1000 genomes]
rs9371624	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9383632	0.81[EUR][1000 genomes]
rs9383633	0.81[EUR][1000 genomes]
rs9383996	0.91[ASN][1000 genomes]
rs9384002	0.92[ASN][1000 genomes]
rs9384003	0.92[ASN][1000 genomes]
rs9384010	0.92[ASN][1000 genomes]
rs9384011	0.92[ASN][1000 genomes]
rs9384023	0.91[EUR][1000 genomes]
rs9384030	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9384033	0.97[ASN][1000 genomes]
rs9397110	0.81[EUR][1000 genomes]
rs9397517	0.91[ASN][1000 genomes]
rs9397521	0.91[ASN][1000 genomes]
rs9397541	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs942513	0.90[ASN][1000 genomes]
rs942514	0.90[ASN][1000 genomes]
rs9478336	0.91[ASN][1000 genomes]
rs9479328	0.92[ASN][1000 genomes]
rs9479329	0.92[ASN][1000 genomes]
rs9479330	0.92[ASN][1000 genomes]
rs9479331	0.92[ASN][1000 genomes]
rs9479332	0.92[ASN][1000 genomes]
rs9479339	0.91[ASN][1000 genomes]
rs9479340	0.91[ASN][1000 genomes]
rs9479341	0.91[ASN][1000 genomes]
rs9479343	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150315000-150324800	Weak transcription	Dnd41	blood
2	chr6:150316000-150316200	Bivalent Enhancer	Thymus	Thymus

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