Variant report

Variant	rs9479340
Chromosome Location	chr6:150311221-150311222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150295506..150297191-chr6:150310699..150313123,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11155692	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11155693	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11964763	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11967324	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11967376	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11967392	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969666	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969681	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13192866	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13199630	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13214660	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1830833	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1853666	0.91[ASN][1000 genomes]
rs1853667	0.91[ASN][1000 genomes]
rs2224893	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2275092	0.89[ASN][1000 genomes]
rs2343265	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3860819	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3888034	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3963990	0.89[ASN][1000 genomes]
rs4472362	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6940683	0.85[ASN][1000 genomes]
rs7739781	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7762217	0.87[ASN][1000 genomes]
rs9322232	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9371624	0.89[ASN][1000 genomes]
rs9383632	0.83[EUR][1000 genomes]
rs9383633	0.83[EUR][1000 genomes]
rs9383996	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9384002	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9384003	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9384010	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9384011	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9384030	0.89[ASN][1000 genomes]
rs9384033	0.89[ASN][1000 genomes]
rs9397110	0.83[EUR][1000 genomes]
rs9397517	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9397521	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9397541	0.89[ASN][1000 genomes]
rs942513	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs942514	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9478336	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9479328	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9479329	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9479330	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9479331	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9479332	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9479339	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9479341	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9479343	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150309600-150311600	ZNF genes & repeats	Lung	lung
2	chr6:150309800-150311400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
3	chr6:150309800-150313600	Bivalent/Poised TSS	Thymus	Thymus
4	chr6:150310000-150313400	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
5	chr6:150310200-150311400	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
6	chr6:150310200-150311400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:150310200-150311800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
8	chr6:150310200-150311800	Bivalent Enhancer	Stomach Mucosa	stomach
9	chr6:150310400-150311800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:150310400-150313000	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
11	chr6:150310600-150311400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:150310600-150311400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
13	chr6:150310600-150311800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:150310600-150311800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
15	chr6:150310600-150311800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr6:150310600-150312200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
17	chr6:150310800-150311400	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:150310800-150311400	Bivalent Enhancer	Primary hematopoietic stem cells	blood
19	chr6:150310800-150311400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
20	chr6:150310800-150311600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
21	chr6:150310800-150311600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:150310800-150311800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:150310800-150311800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
24	chr6:150310800-150311800	Bivalent Enhancer	Fetal Heart	heart
25	chr6:150310800-150312000	Flanking Bivalent TSS/Enh	NHEK	skin
26	chr6:150310800-150312400	Enhancers	Gastric	stomach
27	chr6:150310800-150312400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
28	chr6:150310800-150312600	Bivalent Enhancer	Liver	Liver
29	chr6:150310800-150312600	Bivalent Enhancer	Fetal Muscle Leg	muscle
30	chr6:150310800-150312800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
31	chr6:150311000-150311400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:150311000-150311400	Flanking Bivalent TSS/Enh	Primary T helper naive cells from peripheral blood	blood
33	chr6:150311000-150311400	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
34	chr6:150311000-150311400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
35	chr6:150311000-150311400	Flanking Bivalent TSS/Enh	Spleen	Spleen
36	chr6:150311000-150311600	Bivalent Enhancer	Brain Germinal Matrix	brain
37	chr6:150311000-150311600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
38	chr6:150311000-150311800	Bivalent Enhancer	Adipose Nuclei	Adipose
39	chr6:150311000-150311800	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
40	chr6:150311000-150311800	Bivalent Enhancer	Fetal Intestine Large	intestine
41	chr6:150311000-150311800	Bivalent Enhancer	Psoas Muscle	Psoas
42	chr6:150311000-150312000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
43	chr6:150311000-150312000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
44	chr6:150311000-150312000	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:150311000-150312000	Bivalent Enhancer	Fetal Stomach	stomach
46	chr6:150311000-150312200	Bivalent Enhancer	Fetal Lung	lung
47	chr6:150311000-150312600	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
48	chr6:150311000-150312600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
49	chr6:150311000-150312800	Bivalent Enhancer	Fetal Brain Male	brain
50	chr6:150311000-150313000	Bivalent Enhancer	Placenta	Placenta

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