Variant report

Variant	rs11967392
Chromosome Location	chr6:150310874-150310875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150295506..150297191-chr6:150310699..150313123,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11155692	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11155693	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11964763	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11967324	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11967376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969666	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13192866	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13199630	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13214660	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1830833	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1853666	0.91[ASN][1000 genomes]
rs1853667	0.91[ASN][1000 genomes]
rs2224893	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2275092	0.89[ASN][1000 genomes]
rs2343265	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3860819	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3888034	0.95[ASN][1000 genomes]
rs3963990	0.89[ASN][1000 genomes]
rs4472362	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6940683	0.85[ASN][1000 genomes]
rs7739781	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7762217	0.87[ASN][1000 genomes]
rs9322232	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9371624	0.89[ASN][1000 genomes]
rs9383632	0.83[EUR][1000 genomes]
rs9383633	0.83[EUR][1000 genomes]
rs9383996	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9384002	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9384003	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9384010	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9384011	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9384030	0.89[ASN][1000 genomes]
rs9384033	0.89[ASN][1000 genomes]
rs9397110	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs9397517	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9397521	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9397541	0.89[ASN][1000 genomes]
rs942513	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs942514	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9478336	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9479328	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9479329	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9479330	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9479331	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9479332	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9479339	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9479340	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9479341	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9479343	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150309600-150311000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
2	chr6:150309600-150311200	Enhancers	Pancreas	Pancrea
3	chr6:150309600-150311600	ZNF genes & repeats	Lung	lung
4	chr6:150309800-150311000	ZNF genes & repeats	Spleen	Spleen
5	chr6:150309800-150311400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
6	chr6:150309800-150313600	Bivalent/Poised TSS	Thymus	Thymus
7	chr6:150310000-150311200	Weak transcription	Right Atrium	heart
8	chr6:150310000-150313400	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
9	chr6:150310200-150311000	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
10	chr6:150310200-150311200	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
11	chr6:150310200-150311400	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
12	chr6:150310200-150311400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:150310200-150311800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
14	chr6:150310200-150311800	Bivalent Enhancer	Stomach Mucosa	stomach
15	chr6:150310400-150311200	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:150310400-150311800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:150310400-150313000	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
18	chr6:150310600-150311000	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
19	chr6:150310600-150311000	Bivalent Enhancer	Dnd41	blood
20	chr6:150310600-150311200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:150310600-150311400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr6:150310600-150311400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
23	chr6:150310600-150311800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
24	chr6:150310600-150311800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
25	chr6:150310600-150311800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
26	chr6:150310600-150312200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
27	chr6:150310800-150311000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:150310800-150311000	Bivalent Enhancer	Primary B cells from cord blood	blood
29	chr6:150310800-150311000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
30	chr6:150310800-150311000	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr6:150310800-150311000	Bivalent Enhancer	Fetal Kidney	kidney
32	chr6:150310800-150311000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
33	chr6:150310800-150311000	Bivalent Enhancer	HSMMtube	muscle
34	chr6:150310800-150311200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
35	chr6:150310800-150311200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:150310800-150311200	Bivalent Enhancer	GM12878-XiMat	blood
37	chr6:150310800-150311200	Bivalent Enhancer	HMEC	breast
38	chr6:150310800-150311400	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr6:150310800-150311400	Bivalent Enhancer	Primary hematopoietic stem cells	blood
40	chr6:150310800-150311400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
41	chr6:150310800-150311600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
42	chr6:150310800-150311600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr6:150310800-150311800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:150310800-150311800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
45	chr6:150310800-150311800	Bivalent Enhancer	Fetal Heart	heart
46	chr6:150310800-150312000	Flanking Bivalent TSS/Enh	NHEK	skin
47	chr6:150310800-150312400	Enhancers	Gastric	stomach
48	chr6:150310800-150312400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
49	chr6:150310800-150312600	Bivalent Enhancer	Liver	Liver
50	chr6:150310800-150312600	Bivalent Enhancer	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links