Variant report

Variant	rs6927421
Chromosome Location	chr6:56065640-56065641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1022539	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12190324	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12199712	0.86[AMR][1000 genomes]
rs12199742	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1319111	0.86[AMR][1000 genomes]
rs13193925	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs13209836	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1925139	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1925143	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1925144	0.90[AMR][1000 genomes]
rs1925149	0.85[AMR][1000 genomes]
rs1925185	0.83[AFR][1000 genomes]
rs1925189	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1980487	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2038149	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2038150	0.84[AFR][1000 genomes]
rs2223600	0.81[AMR][1000 genomes]
rs2328675	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2397208	0.87[AMR][1000 genomes]
rs2876630	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3846922	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3846923	0.87[AMR][1000 genomes]
rs3846924	0.90[AMR][1000 genomes]
rs3846925	0.90[AMR][1000 genomes]
rs3857612	0.85[AMR][1000 genomes]
rs4119567	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4126555	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4126556	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4126557	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4126558	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4140573	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4490668	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4495274	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4554321	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4607420	0.81[AFR][1000 genomes]
rs4715588	0.87[AMR][1000 genomes]
rs4715589	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4715593	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6459128	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6459129	0.87[AMR][1000 genomes]
rs6459133	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6459134	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6459136	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6904431	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6904899	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6908195	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6911907	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6914495	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6914892	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6922057	0.83[AFR][1000 genomes]
rs6934945	0.89[AMR][1000 genomes]
rs6935152	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6935200	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6939465	0.86[AMR][1000 genomes]
rs7450147	0.87[AMR][1000 genomes]
rs7754787	0.87[AMR][1000 genomes]
rs7762422	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9357892	0.85[AFR][1000 genomes]
rs9357894	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9382592	0.82[AMR][1000 genomes]
rs9382595	0.92[AMR][1000 genomes]
rs9396181	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9475621	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56064000-56090800	Weak transcription	Fetal Lung	lung
2	chr6:56065200-56069000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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