Variant report

Variant	rs6929787
Chromosome Location	chr6:143229290-143229291
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143222948..143224826-chr6:143228483..143231259,2	MCF-7	breast:
2	chr6:143228299..143231052-chr6:143232698..143234993,4	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10434868	1.00[JPT][hapmap]
rs6919707	1.00[JPT][hapmap]
rs6925599	0.94[ASN][1000 genomes]
rs7749585	0.94[ASN][1000 genomes]
rs7775518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9386020	1.00[JPT][hapmap]
rs9390051	1.00[JPT][hapmap]
rs9496474	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143206600-143239400	Weak transcription	Gastric	stomach
2	chr6:143214400-143230800	Weak transcription	Small Intestine	intestine
3	chr6:143220600-143232000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:143221600-143241400	Weak transcription	Lung	lung
5	chr6:143221600-143247600	Weak transcription	Ovary	ovary
6	chr6:143221800-143231800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:143222000-143247600	Weak transcription	Aorta	Aorta
8	chr6:143222200-143236400	Weak transcription	Right Atrium	heart
9	chr6:143222400-143247600	Weak transcription	Fetal Stomach	stomach
10	chr6:143224000-143230800	Weak transcription	Fetal Thymus	thymus
11	chr6:143224200-143247400	Weak transcription	Adipose Nuclei	Adipose
12	chr6:143224200-143247600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:143224200-143247600	Weak transcription	Pancreas	Pancrea
14	chr6:143224400-143232600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:143224600-143233600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr6:143224600-143234000	Weak transcription	Primary B cells from cord blood	blood
17	chr6:143224600-143245800	Weak transcription	HepG2	liver
18	chr6:143225000-143247600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:143225200-143247200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr6:143225400-143231000	Weak transcription	Thymus	Thymus
21	chr6:143225600-143239000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:143225800-143234000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:143225800-143239400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:143226000-143233400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:143226000-143239600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:143226000-143247000	Weak transcription	NHLF	lung
27	chr6:143226200-143234600	Weak transcription	Dnd41	blood
28	chr6:143226200-143236400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:143226200-143239600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:143226200-143239600	Weak transcription	Osteobl	bone
31	chr6:143226400-143236200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:143226400-143239400	Weak transcription	NHEK	skin
33	chr6:143226600-143232600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:143226600-143247000	Weak transcription	HMEC	breast
35	chr6:143227800-143229800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:143228200-143229400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:143228600-143229600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
38	chr6:143228800-143229800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
39	chr6:143228800-143234200	Enhancers	Primary T cells from cord blood	blood
40	chr6:143228800-143239000	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr6:143229000-143229400	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr6:143229000-143229400	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
43	chr6:143229000-143229600	Enhancers	Primary T cells fromperipheralblood	blood
44	chr6:143229000-143229600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
45	chr6:143229000-143229600	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr6:143229000-143229600	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr6:143229000-143230000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
48	chr6:143229000-143230000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
49	chr6:143229000-143232800	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr6:143229000-143232800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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