Variant report

Variant	rs9496474
Chromosome Location	chr6:143217932-143217933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143213292..143215396-chr6:143217878..143220305,3	K562	blood:
2	chr6:143207135..143210789-chr6:143217602..143220867,3	K562	blood:
3	chr6:143207135..143211249-chr6:143217082..143220867,4	K562	blood:
4	chr6:143211413..143214792-chr6:143216142..143219505,3	K562	blood:
5	chr6:143217838..143219576-chr6:143220327..143223049,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6925599	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929787	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs7749585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775518	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830829	chr6:143058408-143218077	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143206600-143221400	Weak transcription	Lung	lung
2	chr6:143206600-143239400	Weak transcription	Gastric	stomach
3	chr6:143206800-143220000	Weak transcription	Ovary	ovary
4	chr6:143206800-143221400	Weak transcription	Aorta	Aorta
5	chr6:143207200-143221600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:143208000-143220000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:143208000-143220400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:143208200-143220000	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:143208200-143220000	Weak transcription	HSMM	muscle
10	chr6:143208800-143219000	Weak transcription	NHDF-Ad	bronchial
11	chr6:143208800-143220600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:143208800-143221400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:143209600-143221000	Weak transcription	Primary B cells from peripheral blood	blood
14	chr6:143210000-143220000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:143212400-143223000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr6:143213000-143219800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr6:143213600-143220000	Weak transcription	Right Ventricle	heart
18	chr6:143214200-143220000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:143214200-143220000	Weak transcription	Spleen	Spleen
20	chr6:143214200-143223000	Weak transcription	Thymus	Thymus
21	chr6:143214200-143223800	Weak transcription	Pancreas	Pancrea
22	chr6:143214400-143220000	Weak transcription	Placenta	Placenta
23	chr6:143214400-143220000	Weak transcription	Left Ventricle	heart
24	chr6:143214400-143220200	Weak transcription	Fetal Muscle Leg	muscle
25	chr6:143214400-143221400	Weak transcription	Esophagus	oesophagus
26	chr6:143214400-143230800	Weak transcription	Small Intestine	intestine
27	chr6:143214600-143219800	Weak transcription	Brain Angular Gyrus	brain
28	chr6:143214600-143220000	Weak transcription	Brain Hippocampus Middle	brain
29	chr6:143214600-143220200	Weak transcription	Fetal Heart	heart
30	chr6:143214600-143223200	Weak transcription	Duodenum Mucosa	Duodenum
31	chr6:143214800-143218600	Weak transcription	NHLF	lung
32	chr6:143214800-143219000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:143214800-143219000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:143214800-143220000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:143214800-143220200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:143214800-143220200	Weak transcription	NH-A	brain
37	chr6:143214800-143220600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:143214800-143221800	Weak transcription	HMEC	breast
39	chr6:143215000-143218600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:143215000-143219200	Weak transcription	Osteobl	bone
41	chr6:143215000-143219800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:143215000-143220000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr6:143215000-143222800	Weak transcription	NHEK	skin
44	chr6:143216000-143221600	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr6:143216400-143221400	Enhancers	Primary T helper naive cells from peripheral blood	blood
46	chr6:143216400-143221400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
47	chr6:143216400-143222200	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr6:143216400-143223800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr6:143216600-143222200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
50	chr6:143216800-143220000	Weak transcription	Fetal Thymus	thymus

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