Variant report

Variant	rs7775518
Chromosome Location	chr6:143231070-143231071
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143230986..143233145-chr6:143240864..143243757,2	MCF-7	breast:
2	chr6:143222948..143224826-chr6:143228483..143231259,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6925599	1.00[ASN][1000 genomes]
rs6929787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7749585	1.00[ASN][1000 genomes]
rs9496474	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143206600-143239400	Weak transcription	Gastric	stomach
2	chr6:143220600-143232000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:143221600-143241400	Weak transcription	Lung	lung
4	chr6:143221600-143247600	Weak transcription	Ovary	ovary
5	chr6:143221800-143231800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:143222000-143247600	Weak transcription	Aorta	Aorta
7	chr6:143222200-143236400	Weak transcription	Right Atrium	heart
8	chr6:143222400-143247600	Weak transcription	Fetal Stomach	stomach
9	chr6:143224200-143247400	Weak transcription	Adipose Nuclei	Adipose
10	chr6:143224200-143247600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:143224200-143247600	Weak transcription	Pancreas	Pancrea
12	chr6:143224400-143232600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:143224600-143233600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:143224600-143234000	Weak transcription	Primary B cells from cord blood	blood
15	chr6:143224600-143245800	Weak transcription	HepG2	liver
16	chr6:143225000-143247600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr6:143225200-143247200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr6:143225600-143239000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:143225800-143234000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:143225800-143239400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:143226000-143233400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:143226000-143239600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:143226000-143247000	Weak transcription	NHLF	lung
24	chr6:143226200-143234600	Weak transcription	Dnd41	blood
25	chr6:143226200-143236400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:143226200-143239600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:143226200-143239600	Weak transcription	Osteobl	bone
28	chr6:143226400-143236200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:143226400-143239400	Weak transcription	NHEK	skin
30	chr6:143226600-143232600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:143226600-143247000	Weak transcription	HMEC	breast
32	chr6:143228800-143234200	Enhancers	Primary T cells from cord blood	blood
33	chr6:143228800-143239000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr6:143229000-143232800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr6:143229000-143232800	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr6:143229000-143232800	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr6:143229000-143232800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr6:143229000-143233200	Weak transcription	Primary B cells from peripheral blood	blood
39	chr6:143229000-143233400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr6:143229000-143234000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr6:143229000-143234000	Weak transcription	Psoas Muscle	Psoas
42	chr6:143229000-143234200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr6:143229000-143247000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr6:143229000-143247600	Weak transcription	Fetal Muscle Leg	muscle
45	chr6:143229200-143232000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr6:143229200-143234000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
47	chr6:143229200-143234000	Enhancers	Primary T helper cells fromperipheralblood	blood
48	chr6:143229200-143234000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
49	chr6:143229200-143239000	Weak transcription	HSMM	muscle
50	chr6:143229200-143239000	Weak transcription	HSMMtube	muscle

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