Variant report

Variant	rs7749585
Chromosome Location	chr6:143220643-143220644
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143218196..143220701-chr6:143220866..143222428,2	MCF-7	breast:
2	chr6:143207135..143210789-chr6:143217602..143220867,3	K562	blood:
3	chr6:143207135..143211249-chr6:143217082..143220867,4	K562	blood:
4	chr6:143220374..143223308-chr6:143223700..143225614,2	K562	blood:
5	chr6:143217838..143219576-chr6:143220327..143223049,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs6925599	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926063	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6929787	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs7775518	1.00[ASN][1000 genomes]
rs9496474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143206600-143221400	Weak transcription	Lung	lung
2	chr6:143206600-143239400	Weak transcription	Gastric	stomach
3	chr6:143206800-143221400	Weak transcription	Aorta	Aorta
4	chr6:143207200-143221600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:143208800-143221400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:143209600-143221000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr6:143212400-143223000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:143214200-143223000	Weak transcription	Thymus	Thymus
9	chr6:143214200-143223800	Weak transcription	Pancreas	Pancrea
10	chr6:143214400-143221400	Weak transcription	Esophagus	oesophagus
11	chr6:143214400-143230800	Weak transcription	Small Intestine	intestine
12	chr6:143214600-143223200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr6:143214800-143221800	Weak transcription	HMEC	breast
14	chr6:143215000-143222800	Weak transcription	NHEK	skin
15	chr6:143216000-143221600	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr6:143216400-143221400	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr6:143216400-143221400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr6:143216400-143222200	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr6:143216400-143223800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr6:143216600-143222200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr6:143217000-143223600	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr6:143217200-143221400	Enhancers	Primary T cells from cord blood	blood
23	chr6:143217400-143221800	Strong transcription	Primary B cells from cord blood	blood
24	chr6:143217800-143223400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr6:143218600-143221600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:143218600-143222200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr6:143218600-143222200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr6:143218600-143224000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:143218600-143226000	Enhancers	NHLF	lung
30	chr6:143218800-143221800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr6:143219000-143220800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:143219000-143221600	Enhancers	Primary T cells fromperipheralblood	blood
33	chr6:143219000-143222200	Enhancers	Psoas Muscle	Psoas
34	chr6:143219400-143221000	Weak transcription	GM12878-XiMat	blood
35	chr6:143219400-143222800	Enhancers	Fetal Brain Male	brain
36	chr6:143219600-143221400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:143219600-143223800	Weak transcription	HepG2	liver
38	chr6:143219600-143223800	Enhancers	NHDF-Ad	bronchial
39	chr6:143219800-143220800	Enhancers	Brain Angular Gyrus	brain
40	chr6:143219800-143221200	Enhancers	Osteobl	bone
41	chr6:143219800-143221400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:143219800-143221400	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr6:143219800-143221400	Enhancers	Brain Cingulate Gyrus	brain
44	chr6:143219800-143222000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr6:143220000-143221000	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr6:143220000-143221000	Enhancers	Spleen	Spleen
47	chr6:143220000-143221200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr6:143220000-143221200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr6:143220000-143221400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:143220000-143221400	Enhancers	Cortex derived primary cultured neurospheres	brain

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