Variant report

Variant	rs6931348
Chromosome Location	chr6:38576310-38576311
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11964942	1.00[AFR][1000 genomes]
rs11966551	1.00[ASW][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11966915	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11969592	0.94[AFR][1000 genomes]
rs1698998	1.00[CHD][hapmap]
rs2748158	1.00[CHD][hapmap]
rs35812457	1.00[AFR][1000 genomes]
rs57079542	1.00[AFR][1000 genomes]
rs57692374	1.00[AFR][1000 genomes]
rs61507646	1.00[AFR][1000 genomes]
rs6913905	0.97[AFR][1000 genomes]
rs73412330	1.00[AFR][1000 genomes]
rs73412393	1.00[AFR][1000 genomes]
rs73412397	1.00[AFR][1000 genomes]
rs73414307	1.00[AFR][1000 genomes]
rs73414309	1.00[AFR][1000 genomes]
rs73414316	1.00[AFR][1000 genomes]
rs73414319	1.00[AFR][1000 genomes]
rs73414323	1.00[AFR][1000 genomes]
rs73414327	1.00[AFR][1000 genomes]
rs73414339	1.00[AFR][1000 genomes]
rs73414341	1.00[AFR][1000 genomes]
rs73733926	1.00[AFR][1000 genomes]
rs7744175	1.00[ASW][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38535800-38578200	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:38556000-38580400	Weak transcription	Ovary	ovary
3	chr6:38557400-38578000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:38560800-38580000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:38560800-38580200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:38561400-38577600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:38561400-38578000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:38562000-38578000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:38562200-38580000	Weak transcription	Aorta	Aorta
10	chr6:38562800-38579800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:38564000-38580400	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr6:38565400-38589200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr6:38565800-38583200	Weak transcription	Primary T cells from cord blood	blood
14	chr6:38565800-38583600	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr6:38567800-38580400	Weak transcription	Right Ventricle	heart
16	chr6:38568200-38580000	Weak transcription	Psoas Muscle	Psoas
17	chr6:38568200-38584200	Weak transcription	Primary B cells from cord blood	blood
18	chr6:38571000-38580000	Weak transcription	Small Intestine	intestine
19	chr6:38571400-38577600	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:38571600-38581800	Weak transcription	Left Ventricle	heart
21	chr6:38572000-38577600	Weak transcription	Fetal Lung	lung
22	chr6:38572000-38578000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr6:38572000-38591600	Weak transcription	Fetal Intestine Small	intestine
24	chr6:38572600-38577400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:38572600-38579800	Weak transcription	NHLF	lung
26	chr6:38572800-38579800	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr6:38572800-38581800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr6:38573000-38579800	Weak transcription	HSMMtube	muscle
29	chr6:38574800-38577800	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr6:38576200-38579800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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