Variant report

Variant	rs73412330
Chromosome Location	chr6:38535685-38535686
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38535241..38537591-chr6:38552081..38553699,2	MCF-7	breast:
2	chr6:38535111..38538464-chr6:38540181..38544221,3	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11964942	1.00[AFR][1000 genomes]
rs11966551	1.00[AFR][1000 genomes]
rs11966915	1.00[AFR][1000 genomes]
rs11969592	0.94[AFR][1000 genomes]
rs35812457	1.00[AFR][1000 genomes]
rs57079542	1.00[AFR][1000 genomes]
rs57692374	1.00[AFR][1000 genomes]
rs61507646	1.00[AFR][1000 genomes]
rs6913905	0.97[AFR][1000 genomes]
rs6931348	1.00[AFR][1000 genomes]
rs73412393	1.00[AFR][1000 genomes]
rs73412397	1.00[AFR][1000 genomes]
rs73414307	1.00[AFR][1000 genomes]
rs73414309	1.00[AFR][1000 genomes]
rs73414316	1.00[AFR][1000 genomes]
rs73414319	1.00[AFR][1000 genomes]
rs73414323	1.00[AFR][1000 genomes]
rs73414327	1.00[AFR][1000 genomes]
rs73414339	1.00[AFR][1000 genomes]
rs73414341	1.00[AFR][1000 genomes]
rs73733926	1.00[AFR][1000 genomes]
rs7744175	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38496600-38539600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:38497000-38538800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr6:38497000-38539400	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr6:38510600-38546800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:38513000-38539200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:38514200-38539400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr6:38515600-38535800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:38516000-38538800	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr6:38519200-38538800	Weak transcription	Primary T cells from cord blood	blood
10	chr6:38519200-38539400	Weak transcription	Left Ventricle	heart
11	chr6:38519600-38554800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:38523000-38571600	Weak transcription	HSMMtube	muscle
13	chr6:38524000-38537400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:38524000-38539200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr6:38532200-38539600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr6:38532400-38547800	Weak transcription	Fetal Kidney	kidney
17	chr6:38532800-38538200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr6:38533000-38544000	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr6:38533200-38537800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr6:38533200-38547000	Weak transcription	Aorta	Aorta
21	chr6:38533400-38536200	Enhancers	Brain Germinal Matrix	brain
22	chr6:38533600-38536400	Enhancers	Fetal Brain Male	brain
23	chr6:38533800-38536200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:38534000-38536000	Enhancers	Muscle Satellite Cultured Cells	--
25	chr6:38534000-38539200	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr6:38534200-38535800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:38534200-38535800	Enhancers	NH-A	brain
28	chr6:38534200-38536000	Enhancers	Fetal Brain Female	brain
29	chr6:38534200-38536400	Enhancers	Brain Angular Gyrus	brain
30	chr6:38534200-38536400	Enhancers	NHDF-Ad	bronchial
31	chr6:38534200-38539600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr6:38534200-38544800	Weak transcription	Fetal Intestine Large	intestine
33	chr6:38534400-38535800	Enhancers	Fetal Lung	lung
34	chr6:38534400-38535800	Enhancers	Osteobl	bone
35	chr6:38534400-38536000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:38534400-38544400	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr6:38534400-38561600	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr6:38534800-38535800	Enhancers	Fetal Heart	heart
39	chr6:38534800-38536200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:38534800-38536800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr6:38534800-38537600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr6:38534800-38537800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr6:38534800-38547000	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr6:38535000-38538200	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr6:38535200-38535800	Enhancers	Adipose Nuclei	Adipose
46	chr6:38535200-38535800	Enhancers	Colon Smooth Muscle	Colon
47	chr6:38535200-38535800	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr6:38535200-38535800	Enhancers	Psoas Muscle	Psoas
49	chr6:38535400-38537600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr6:38535400-38537800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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