Variant report

Variant	rs73414319
Chromosome Location	chr6:38584070-38584071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11964942	1.00[AFR][1000 genomes]
rs11966551	1.00[AFR][1000 genomes]
rs11966915	1.00[AFR][1000 genomes]
rs11969592	0.94[AFR][1000 genomes]
rs35812457	1.00[AFR][1000 genomes]
rs57079542	1.00[AFR][1000 genomes]
rs57692374	1.00[AFR][1000 genomes]
rs61507646	1.00[AFR][1000 genomes]
rs6913905	0.97[AFR][1000 genomes]
rs6931348	1.00[AFR][1000 genomes]
rs73412330	1.00[AFR][1000 genomes]
rs73412393	1.00[AFR][1000 genomes]
rs73412397	1.00[AFR][1000 genomes]
rs73414307	1.00[AFR][1000 genomes]
rs73414309	1.00[AFR][1000 genomes]
rs73414316	1.00[AFR][1000 genomes]
rs73414323	1.00[AFR][1000 genomes]
rs73414327	1.00[AFR][1000 genomes]
rs73414339	1.00[AFR][1000 genomes]
rs73414341	1.00[AFR][1000 genomes]
rs73733926	1.00[AFR][1000 genomes]
rs7744175	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38565400-38589200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr6:38568200-38584200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:38572000-38591600	Weak transcription	Fetal Intestine Small	intestine
4	chr6:38580600-38600200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:38580600-38601800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:38580800-38585800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:38580800-38589400	Weak transcription	Right Atrium	heart
8	chr6:38580800-38594000	Weak transcription	Small Intestine	intestine
9	chr6:38580800-38604400	Weak transcription	Ovary	ovary
10	chr6:38581000-38585800	Weak transcription	HSMMtube	muscle
11	chr6:38581000-38586200	Weak transcription	Osteobl	bone
12	chr6:38581200-38585800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:38581400-38585800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:38581800-38585800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:38582200-38587200	Weak transcription	Psoas Muscle	Psoas
16	chr6:38582600-38587200	Weak transcription	Right Ventricle	heart
17	chr6:38583000-38599200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr6:38583400-38600400	Weak transcription	Left Ventricle	heart
19	chr6:38583800-38602000	Weak transcription	Primary T cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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