Variant report

Variant	rs73414316
Chromosome Location	chr6:38580461-38580462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11964942	1.00[AFR][1000 genomes]
rs11966551	1.00[AFR][1000 genomes]
rs11966915	1.00[AFR][1000 genomes]
rs11969592	0.94[AFR][1000 genomes]
rs35812457	1.00[AFR][1000 genomes]
rs57079542	1.00[AFR][1000 genomes]
rs57692374	1.00[AFR][1000 genomes]
rs61507646	1.00[AFR][1000 genomes]
rs6913905	0.97[AFR][1000 genomes]
rs6931348	1.00[AFR][1000 genomes]
rs73412330	1.00[AFR][1000 genomes]
rs73412393	1.00[AFR][1000 genomes]
rs73412397	1.00[AFR][1000 genomes]
rs73414307	1.00[AFR][1000 genomes]
rs73414309	1.00[AFR][1000 genomes]
rs73414319	1.00[AFR][1000 genomes]
rs73414323	1.00[AFR][1000 genomes]
rs73414327	1.00[AFR][1000 genomes]
rs73414339	1.00[AFR][1000 genomes]
rs73414341	1.00[AFR][1000 genomes]
rs73733926	1.00[AFR][1000 genomes]
rs7744175	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38565400-38589200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr6:38565800-38583200	Weak transcription	Primary T cells from cord blood	blood
3	chr6:38565800-38583600	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr6:38568200-38584200	Weak transcription	Primary B cells from cord blood	blood
5	chr6:38571600-38581800	Weak transcription	Left Ventricle	heart
6	chr6:38572000-38591600	Weak transcription	Fetal Intestine Small	intestine
7	chr6:38572800-38581800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:38577600-38580800	Enhancers	Fetal Lung	lung
9	chr6:38578000-38581400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:38578000-38582600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:38578400-38581000	Enhancers	NHDF-Ad	bronchial
12	chr6:38578600-38581600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:38579000-38581000	Enhancers	Osteobl	bone
14	chr6:38579600-38580800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:38579600-38580800	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr6:38579600-38581200	Enhancers	HSMM	muscle
17	chr6:38579800-38580600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:38579800-38580800	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr6:38579800-38580800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:38579800-38580800	Enhancers	Adipose Nuclei	Adipose
21	chr6:38579800-38580800	Enhancers	Fetal Intestine Large	intestine
22	chr6:38579800-38580800	Enhancers	NHLF	lung
23	chr6:38579800-38581000	Enhancers	Muscle Satellite Cultured Cells	--
24	chr6:38580000-38580800	Enhancers	Aorta	Aorta
25	chr6:38580000-38580800	Enhancers	Right Atrium	heart
26	chr6:38580000-38580800	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr6:38580000-38580800	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr6:38580000-38580800	Enhancers	Small Intestine	intestine
29	chr6:38580000-38580800	Enhancers	NH-A	brain
30	chr6:38580200-38580600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:38580200-38580600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:38580200-38580600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:38580200-38581200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:38580400-38580600	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr6:38580400-38580600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:38580400-38580600	Flanking Active TSS	HSMMtube	muscle
37	chr6:38580400-38580800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:38580400-38580800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr6:38580400-38580800	Enhancers	Ovary	ovary
40	chr6:38580400-38580800	Enhancers	Psoas Muscle	Psoas
41	chr6:38580400-38580800	Enhancers	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links