Variant report

Variant	rs6934085
Chromosome Location	chr6:144849202-144849203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144848573..144853071-chr6:144854031..144858388,6	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10080686	1.00[AMR][1000 genomes]
rs55686531	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55891827	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58526186	1.00[AMR][1000 genomes]
rs59904891	1.00[AMR][1000 genomes]
rs6902639	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6933333	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6939981	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781905	1.00[AMR][1000 genomes]
rs73781911	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781914	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781915	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7741783	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7762641	1.00[AMR][1000 genomes]
rs7767272	1.00[AMR][1000 genomes]
rs7767347	1.00[AMR][1000 genomes]
rs9484882	1.00[AMR][1000 genomes]
rs9496983	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144795800-144849800	Weak transcription	HMEC	breast
2	chr6:144803400-144869800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:144807400-144904000	Weak transcription	Brain Substantia Nigra	brain
4	chr6:144812400-144881000	Weak transcription	Stomach Mucosa	stomach
5	chr6:144812600-144849600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:144812600-144849600	Weak transcription	NH-A	brain
7	chr6:144812600-144869800	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:144813400-144850000	Weak transcription	Colonic Mucosa	Colon
9	chr6:144815000-144855400	Weak transcription	Psoas Muscle	Psoas
10	chr6:144815200-144881000	Weak transcription	NHEK	skin
11	chr6:144816600-144881400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:144821200-144850000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:144821200-144861000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr6:144827200-144857200	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr6:144829000-144849800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:144829200-144849600	Weak transcription	Right Ventricle	heart
17	chr6:144829200-144849800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:144829600-144849800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:144829800-144849600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:144829800-144849600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr6:144829800-144849600	Weak transcription	Spleen	Spleen
22	chr6:144829800-144849800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:144829800-144850000	Weak transcription	Esophagus	oesophagus
24	chr6:144829800-144854200	Weak transcription	Gastric	stomach
25	chr6:144829800-144863800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr6:144831400-144879000	Strong transcription	Primary B cells from cord blood	blood
27	chr6:144831600-144853200	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr6:144831800-144857000	Strong transcription	Primary B cells from peripheral blood	blood
29	chr6:144832200-144856800	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr6:144832400-144862200	Weak transcription	Small Intestine	intestine
31	chr6:144833400-144849600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:144833800-144857000	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr6:144833800-144857200	Strong transcription	Primary T cells from cord blood	blood
34	chr6:144833800-144868200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr6:144834600-144849600	Weak transcription	NHLF	lung
36	chr6:144835000-144856400	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr6:144835800-144849600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr6:144836000-144849800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr6:144836200-144849600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr6:144836400-144849600	Weak transcription	Thymus	Thymus
41	chr6:144836600-144850000	Weak transcription	Pancreas	Pancrea
42	chr6:144836800-144849800	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr6:144837200-144849400	Weak transcription	Fetal Muscle Leg	muscle
44	chr6:144837200-144880800	Weak transcription	Brain Angular Gyrus	brain
45	chr6:144838800-144850000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr6:144839200-144851400	Weak transcription	Aorta	Aorta
47	chr6:144839600-144849600	Weak transcription	Fetal Intestine Large	intestine
48	chr6:144839600-144849600	Weak transcription	Ovary	ovary
49	chr6:144839600-144855400	Weak transcription	HSMMtube	muscle
50	chr6:144841200-144849600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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